PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG163300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 366aa    MW: 39382.8 Da    PI: 4.495
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.71.7e-17101481125
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk.....rknr.atks 80 
                          lp G++F+P d+elv +yL ++++g++  +++  v +++    ++ Pw+L  ++ ++ ++e yf ++   ++++++      ++r     
  Pavir.1KG163300.1.p  10 LPTGVHFRPDDDELVEFYLLPRARGEPapFPAGVVvVDDDAAGSTLPWELLdRHGRGADDEAYFLVPGTATASRKSpaparTQERgCGGG 99 
                          699************************5544433425555678899****745555677799**99877766644433332444545669 PP

                  NAM  81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmhe 125
                          g+Wk++ +  +  s+    ++++ + ++ L ++ gr ++g +  Wvmhe
  Pavir.1KG163300.1.p 100 GTWKSQKRLAHGGSRvddaGEKVCWSRHNLNLHMGRGESGGSVGWVMHE 148
                          9***99885443333344488999************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-224148IPR003441NAC domain
PROSITE profilePS5100520.26310183IPR003441NAC domain
PfamPF023656.3E-1211148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSSVAGMLGL PTGVHFRPDD DELVEFYLLP RARGEPAPFP AGVVVVDDDA AGSTLPWELL  60
DRHGRGADDE AYFLVPGTAT ASRKSPAPAR TQERGCGGGG TWKSQKRLAH GGSRVDDAGE  120
KVCWSRHNLN LHMGRGESGG SVGWVMHESA TAHVAFTGHG KNRKRLPGGG DVDDQTTEEP  180
ASKRARVAAA AGTGCSASSS GSGSTTTTVD RDYPSVERCS EEHQEPKQHS LEWISRVLSN  240
DDLLQSSFPS SVDQNYFFRE FAQAAAPTTE QQVPEYVMLM APLPIIQETA GIAELQECMT  300
TPMDQPEFVP PLPTVQETAG MAELENPYRP MMTQPEFLAP MGVTIADMEA GAQQDVVEWD  360
GFLFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG163300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.12e-80NAC domain-containing protein 48
TrEMBLA0A2T8KV819e-98A0A2T8KV81_9POAL; Uncharacterized protein
STRINGPavir.Ab01268.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-09NAC domain containing protein 60