PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG158700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 315aa    MW: 34120.8 Da    PI: 5.3813
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG158700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.28.6e-122214117128
                  NAM  17 eyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk....kge 98 
                          ++L + v+g++  ++   vi++    ++ Pw+L  ++  a+++e yfF++++ + ++  r+ r  t  ++W ++     v+ +    +++
  Pavir.1KG158700.1.p  22 FFLLPTVRGERawFPGVIVIDDDTAANTLPWKLLkRHGLAGDDEAYFFVRTKDTIKEAARQDRyCTGGARWVSQRP---VFGAscigGER 108
                          5788888888866566678999999********7334445788********************8899999*97655...55544553555 PP

                  NAM  99 lvglkktLvfykgrapkge...ktdWvmheyrl 128
                            + +  L +  gr ++g    +t Wvmhey++
  Pavir.1KG158700.1.p 109 IEWRRINLNLQMGRGRSGGgggSTGWVMHEYTV 141
                          56666679999777766544449********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.58111157IPR003441NAC domain
SuperFamilySSF1019412.88E-1521156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSTKAAVAIG LPPPRRRRAR RFFLLPTVRG ERAWFPGVIV IDDDTAANTL PWKLLKRHGL  60
AGDDEAYFFV RTKDTIKEAA RQDRYCTGGA RWVSQRPVFG ASCIGGERIE WRRINLNLQM  120
GRGRSGGGGG STGWVMHEYT VTEPACPSLK ICHVSFSGHG MDRVPDDEYP DCRQNAEPAS  180
KRARFDADAN RGSSTCVYGS TAPAIDQGYG ASGDVFPQLH AGQQEHSLPF PIDQGISATA  240
HQQQPLPDDN NAADSSSAIC GYDDYEPAQV TDEQILDWGS SFLADDAEPT AEHHKTDEQL  300
MIQETVAAGA AAAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG158700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QIZ71e-143A0A3L6QIZ7_PANMI; Uncharacterized protein
STRINGPavir.Ia01183.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946