PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG143200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 114aa MW: 11853.2 Da PI: 9.9548 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4.2e-10 | 4 | 34 | 19 | 48 |
TTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +G++ W++Ia++++ gRt++++k+ w+++l Pavir.1KG143200.1.p 4 HGMPgnKWSKIAACLP-GRTDNEIKNVWNTHL 34 5555557*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.615 | 1 | 38 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-15 | 2 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.12E-8 | 2 | 34 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-10 | 3 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-8 | 7 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MRLHGMPGNK WSKIAACLPG RTDNEIKNVW NTHLKKKVAL REQQQKAGAA TKNGAGAGTP 60 VTDSSSASSS TTTTNNRSGG SDSGDQCGTS KEPDAAADAS PLRECLLDTR LRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG143200.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152187.1 | 3e-33 | myb-related protein Zm1 | ||||
Swissprot | P20024 | 2e-33 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A291FGK9 | 3e-32 | A0A291FGK9_MISSI; Secondary cell wall MYB 4 | ||||
STRING | Pavir.Ea03006.1.p | 2e-77 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-15 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG143200.1.p |
Publications ? help Back to Top | |||
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