PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG133900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 633aa MW: 71827.9 Da PI: 5.8692

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG133900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.1	4.8e-112	255	624	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+ lL++cAea++s+++ ++lL+++++++sp+gd qRla yf+ AL+ar+a+++s++y++l +++ + ++++l+a++lf ++P+ Pavir.1KG133900.1.p 255 LRALLIQCAEAIASNNQPFDRELLTKIRNHSSPYGDGSQRLANYFVDALEARIAGTGSQIYQKLLAKRRN---TTDVLKAYRLFIAACPF 341 5789*******************************************************999888887...89*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +++ Nq+I++++ g+ +vHiiDf+i G+QWp+L+q +a+R++gpp+lRiTg++ pe+g +++eetg+rLa++Ae ++vpf++ Pavir.1KG133900.1.p 342 ASVAYYYSNQTIVDELVGQPTVHIIDFGIAFGFQWPSLIQRFANREGGPPNLRITGIDVPEPGfrPCKRIEETGKRLAEYAEMFNVPFQY 431 **********************************************************99999******************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + va+r+e++ +++L+++++E+l++n+ ++ ++l de+ +++s+rd+vL+++++++P+v+++ + +ns+ Fl rf e l yys+lf Pavir.1KG133900.1.p 432 QG-VASRWENICIKDLNIDKDEVLIINCLHKTKNLSDETEDIDSARDRVLRTIRRMNPEVLIIGVVNGLYNSPFFLPRFREVLFYYSSLF 520 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d+++++++r +e+ri +Er +lg ++ nvvacegaer+er e++++W++r+ +aGF ++p+++++ k++++ + ++ + + v+e+sg+l Pavir.1KG133900.1.p 521 DMINSTVARSHEARILIERDVLGADVFNVVACEGAERIERPESYKQWQARILKAGFMQLPVNQTILKEIERK-ELYH-EDFLVDEDSGWL 608 *****************************************************************985.5555.56****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 ++gWk+r ++S+W+ Pavir.1KG133900.1.p 609 LQGWKGRITHALSSWK 624 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.022	229	606	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-109	255	624	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MDNPEHCEIN SNMTLEYINK ILMEEDINET ACSIYQEPDA LQATEKPFYD ILGQTYPSSE 60 KETVMNSDSR VGCPKSNDPS NNYREGACSG SLINDFLGSW GMHLTANDRT SQTDHLSSQF 120 TKGDEQANKF VAVIEKLAVD LDSSELAASK QMTDAIVTQK GKHVNKIRSH PHMNLESLDA 180 RNSKHLAVSG SETIRDETFD SVLLCTGQIY CDVAHLREMK AKEAHDSSQN AQSREHGQRQ 240 VKSRAKKQQE EAMDLRALLI QCAEAIASNN QPFDRELLTK IRNHSSPYGD GSQRLANYFV 300 DALEARIAGT GSQIYQKLLA KRRNTTDVLK AYRLFIAACP FASVAYYYSN QTIVDELVGQ 360 PTVHIIDFGI AFGFQWPSLI QRFANREGGP PNLRITGIDV PEPGFRPCKR IEETGKRLAE 420 YAEMFNVPFQ YQGVASRWEN ICIKDLNIDK DEVLIINCLH KTKNLSDETE DIDSARDRVL 480 RTIRRMNPEV LIIGVVNGLY NSPFFLPRFR EVLFYYSSLF DMINSTVARS HEARILIERD 540 VLGADVFNVV ACEGAERIER PESYKQWQAR ILKAGFMQLP VNQTILKEIE RKELYHEDFL 600 VDEDSGWLLQ GWKGRITHAL SSWKPKESYN NH*

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MDNPEHCEIN SNMTLEYINK ILMEEDINET ACSIYQEPDA LQATEKPFYD ILGQTYPSSE  60
KETVMNSDSR VGCPKSNDPS NNYREGACSG SLINDFLGSW GMHLTANDRT SQTDHLSSQF  120
TKGDEQANKF VAVIEKLAVD LDSSELAASK QMTDAIVTQK GKHVNKIRSH PHMNLESLDA  180
RNSKHLAVSG SETIRDETFD SVLLCTGQIY CDVAHLREMK AKEAHDSSQN AQSREHGQRQ  240
VKSRAKKQQE EAMDLRALLI QCAEAIASNN QPFDRELLTK IRNHSSPYGD GSQRLANYFV  300
DALEARIAGT GSQIYQKLLA KRRNTTDVLK AYRLFIAACP FASVAYYYSN QTIVDELVGQ  360
PTVHIIDFGI AFGFQWPSLI QRFANREGGP PNLRITGIDV PEPGFRPCKR IEETGKRLAE  420
YAEMFNVPFQ YQGVASRWEN ICIKDLNIDK DEVLIINCLH KTKNLSDETE DIDSARDRVL  480
RTIRRMNPEV LIIGVVNGLY NSPFFLPRFR EVLFYYSSLF DMINSTVARS HEARILIERD  540
VLGADVFNVV ACEGAERIER PESYKQWQAR ILKAGFMQLP VNQTILKEIE RKELYHEDFL  600
VDEDSGWLLQ GWKGRITHAL SSWKPKESYN NH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-54	237	626	1	381	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG133900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680798.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368QCG2	0.0	A0A368QCG2_SETIT; Uncharacterized protein
STRING	Pavir.J13192.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-161	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG133900.1.p