PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG133800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 626aa MW: 71297 Da PI: 6.8338

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG133800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	374.1	1.8e-114	251	622	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+ lL++cA+a+ ++l a +lL++++++asp+gd+ qRla yf+++L+arla+++ ++y++l ++t+ ++ l+a++lf+ ++P+ Pavir.1KG133800.1.p 251 LRALLIQCAQAIVVNNLPFAGELLKKIRQHASPYGDSSQRLALYFANGLEARLAGTGFKMYQKLMEKRTR---ATDMLKAYRLFVAACPF 337 5789*******************************************************999999998...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +k+++ Nq+I + +++ +vHiiDf+i++G+QWp+L++ +a+R++gpp+lRiTg+g p++g ++ +tg+rLa++A+ ++vpf++ Pavir.1KG133800.1.p 338 PKVAYYFSNQTIADVLNRRPKVHIIDFGITMGFQWPSLIKRFAKREGGPPKLRITGIGVPQPGfrPCAMIDATGKRLAEYAKMFNVPFQY 427 **********************************************************999999****************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +a+r+e++ +e+L+++++E+l+Vn+++q ++l de+ +++s+rd+vL+++k+++P+v+++ + +ns+ Fl rf e l +ys+lf Pavir.1KG133800.1.p 428 QG-IASRWENICIEDLNIDKDEVLIVNCMYQTKYLGDETEDIDSARDRVLRIMKKINPEVLILGMINGFYNSPFFLPRFREVLFHYSSLF 516 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d++++++++++e+ri +Er llg +i nvvacegaer+er et+++W++r +aGFk++p+++ + k +k + d + ++e++g+l Pavir.1KG133800.1.p 517 DMYNTTVAENDEARILIERDLLGTDILNVVACEGAERIERPETYKQWKARSLKAGFKQLPVNQAILKRSIDEKKKNYHDDFVINEDNGWL 606 *************************************************************998877777777788****** PP GRAS 359 vlgWkdrpLvsvSaWr 374 v+gWk+r +++vS+W+ Pavir.1KG133800.1.p 607 VQGWKGRIMYAVSSWK 622 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.078	225	602	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-112	251	622	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MESPEYCEIN SNMTLDYINR LLMEDTDERA SIYQQHDALQ ATEKPFYDIL GQAYPSSSPK 60 ETMIHTYSHI DCPQDSSNSY TEREGSGSFA SDILGPQGTQ LVANDWVSEC DRLSSQFQRG 120 AEEANKLVPS IEKLVVDLDS NGHSDYNQMI GAATGQKIKH VNKIWNHPHA DLELSEARNS 180 KHLAISASET IRDETFDSVL LCDWEVHSDA AYLREMKVKE ASNSRQNVQS KEYGQGQVKS 240 RGKKKEEGID LRALLIQCAQ AIVVNNLPFA GELLKKIRQH ASPYGDSSQR LALYFANGLE 300 ARLAGTGFKM YQKLMEKRTR ATDMLKAYRL FVAACPFPKV AYYFSNQTIA DVLNRRPKVH 360 IIDFGITMGF QWPSLIKRFA KREGGPPKLR ITGIGVPQPG FRPCAMIDAT GKRLAEYAKM 420 FNVPFQYQGI ASRWENICIE DLNIDKDEVL IVNCMYQTKY LGDETEDIDS ARDRVLRIMK 480 KINPEVLILG MINGFYNSPF FLPRFREVLF HYSSLFDMYN TTVAENDEAR ILIERDLLGT 540 DILNVVACEG AERIERPETY KQWKARSLKA GFKQLPVNQA ILKRSIDEKK KNYHDDFVIN 600 EDNGWLVQGW KGRIMYAVSS WKPKE*

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MESPEYCEIN SNMTLDYINR LLMEDTDERA SIYQQHDALQ ATEKPFYDIL GQAYPSSSPK  60
ETMIHTYSHI DCPQDSSNSY TEREGSGSFA SDILGPQGTQ LVANDWVSEC DRLSSQFQRG  120
AEEANKLVPS IEKLVVDLDS NGHSDYNQMI GAATGQKIKH VNKIWNHPHA DLELSEARNS  180
KHLAISASET IRDETFDSVL LCDWEVHSDA AYLREMKVKE ASNSRQNVQS KEYGQGQVKS  240
RGKKKEEGID LRALLIQCAQ AIVVNNLPFA GELLKKIRQH ASPYGDSSQR LALYFANGLE  300
ARLAGTGFKM YQKLMEKRTR ATDMLKAYRL FVAACPFPKV AYYFSNQTIA DVLNRRPKVH  360
IIDFGITMGF QWPSLIKRFA KREGGPPKLR ITGIGVPQPG FRPCAMIDAT GKRLAEYAKM  420
FNVPFQYQGI ASRWENICIE DLNIDKDEVL IVNCMYQTKY LGDETEDIDS ARDRVLRIMK  480
KINPEVLILG MINGFYNSPF FLPRFREVLF HYSSLFDMYN TTVAENDEAR ILIERDLLGT  540
DILNVVACEG AERIERPETY KQWKARSLKA GFKQLPVNQA ILKRSIDEKK KNYHDDFVIN  600
EDNGWLVQGW KGRIMYAVSS WKPKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-62	241	624	9	381	Protein SCARECROW
5b3h_A	2e-62	241	624	8	380	Protein SCARECROW
5b3h_D	2e-62	241	624	8	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG133800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680688.1	0.0	scarecrow-like protein 9
Refseq	XP_022680689.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2T7E742	0.0	A0A2T7E742_9POAL; Uncharacterized protein
STRING	Pavir.J21106.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-163	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG133800.1.p