PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG123400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 406aa MW: 42909.7 Da PI: 9.4508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG123400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	236	291	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Pavir.1KG123400.1.p 236 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 291 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.142	233	293	IPR017930	Myb domain
SuperFamily	SSF46689	2.76E-17	234	294	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	235	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-27	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-6	238	289	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MDPTPPRSGR RRRRREYLLA LEEERRKIQV FQRELPLCLE LVTQTIEGMR SQVDGGSEET 60 VSDHGPVLEE LMPLKPSLSL SISSEEHESG AGAGKREEAA ETPPPEATKQ QATPDWLRSV 120 QLWSQEPQQR PSPPPSPQQP LCKPVALSAR KAGGAFQPFE KQKKRAEAPA SSATTAAAVV 180 GDSSDGAPAD TDAAGRRPRS ADKETSGDAE DKGSDRKDGK GGGEEGQSQA QAPARKPRRC 240 WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPNAAAT 300 VQSTGTSTAP APPVPQFIVV GGIWVPPPPE YAAAAAQPAG GNAPGTTTTT AAGTVYAPVA 360 TLPSGVQRPR QGPPRQSSGC SDGRRSGDAS SGSPAVSSSS HTTSA*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MDPTPPRSGR RRRRREYLLA LEEERRKIQV FQRELPLCLE LVTQTIEGMR SQVDGGSEET  60
VSDHGPVLEE LMPLKPSLSL SISSEEHESG AGAGKREEAA ETPPPEATKQ QATPDWLRSV  120
QLWSQEPQQR PSPPPSPQQP LCKPVALSAR KAGGAFQPFE KQKKRAEAPA SSATTAAAVV  180
GDSSDGAPAD TDAAGRRPRS ADKETSGDAE DKGSDRKDGK GGGEEGQSQA QAPARKPRRC  240
WAPELHRRFL QALQQLGGSH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPNAAAT  300
VQSTGTSTAP APPVPQFIVV GGIWVPPPPE YAAAAAQPAG GNAPGTTTTT AAGTVYAPVA  360
TLPSGVQRPR QGPPRQSSGC SDGRRSGDAS SGSPAVSSSS HTTSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-12	236	289	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	14	RSGRRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG123400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035536	4e-86	BT035536.2 Zea mays full-length cDNA clone ZM_BFb0068J14 mRNA, complete cds.
GenBank	KJ726838	4e-86	KJ726838.1 Zea mays clone pUT3378 G2-like transcription factor (GLK5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818344.1	0.0	transcription factor NIGT1-like
Swissprot	Q6Z869	1e-123	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A2T7F3E6	0.0	A0A2T7F3E6_9POAL; Uncharacterized protein
STRING	Pavir.Ab00626.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	3e-52	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG123400.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]