 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.1KG121100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 361aa MW: 38706.6 Da PI: 7.6263 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.1KG121100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 31.1 | 4.2e-10 | 170 | 212 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
e E++RR r+ +++ Lr l+P++ +K +Ka++ A+eYI++L
Pavir.1KG121100.1.p 170 EKEKQRRLRLTEKYTALRLLIPNR-----TKDDKATVISDAIEYIQEL 212
67*********************9.....9****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MYHPQCEHLM AHESRDLDAG QPHLTASAGV AAIPTELSFH LLHSLAAAAA VSTVMPQPTI 60
DYFFGAAADP HQPAVQYEPL PPTHQQHTMN MLRDYCNGVG HYAAAEPYLR GAGTGALVFS 120
ATNDESAAAY MPAGPFESSP PPRATGGRKR SRALMSGGGF HGGPANGGVE KEKQRRLRLT 180
EKYTALRLLI PNRTKDDKAT VISDAIEYIQ ELGRTVEELT LLVGKKRRRM ELQGDVVDVA 240
APVAGEAESS EGEVAPPPAA AAQQRQPIRS TYIQRRSKDT SVDVRIMEED VNIKLATKRR 300
RDGCLAAASR ALDDLRLDLV PSPAARSATA TSTCSTPRRP ALSSCPSADC RGDTETGHRQ 360
*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In anthers, expressed from the meiosis stage to mitosis, with maximum levels at stages 7 and 8, when meiosis initiates, and when endothecium and the middle layer become condensed, respectively. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in anthers; strong expression in the middle layer and tapetum, and weak expression in the endothecium. {ECO:0000269|PubMed:24755456}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
