PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG093500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 302aa    MW: 31851.8 Da    PI: 9.4644
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG093500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-191156147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + 
  Pavir.1KG093500.1.p 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56
                         79******************************.***********985 PP
2Myb_DNA-binding55.71.1e-1763106146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T+eEd  ++ a+++lG++ W++Iar ++ gRt++ +k++w++
  Pavir.1KG093500.1.p  63 RRPFTPEEDTAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.481661IPR017930Myb domain
SuperFamilySSF466891.42E-318104IPR009057Homeodomain-like
SMARTSM007179.6E-171059IPR001005SANT/Myb domain
PfamPF002493.9E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-251264IPR009057Homeodomain-like
CDDcd001673.81E-161355No hitNo description
SMARTSM007178.3E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129421.42963112IPR017930Myb domain
PfamPF002493.0E-1563106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2465112IPR009057Homeodomain-like
CDDcd001671.48E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGVESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTPEE DTAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATAAAPEA  120
ADSERPCKRA SPGPGSPTGS ERSELGHGSG VGGAQVFRPV PRAGGFDAIG AADARPPPPR  180
DEDPITSLSL SLPGLDQASS GFRHDSARSH FQELSPSRSP SPPSPPSSSS SSTTGPYPFS  240
GELVAAMQEM IRAEVRKYMS GAGLRAGCVA GALGEACMPQ LVEGVMRAAA ERVGAVVTSR  300
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-4281144110B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45010.0callus| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00653PBMTransfer from LOC_Os02g09480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG093500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383910.0BT038391.1 Zea mays full-length cDNA clone ZM_BFb0229K03 mRNA, complete cds.
GenBankEU9560450.0EU956045.1 Zea mays clone 1556153 MYB transcription factor TaMYB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817137.11e-171transcription factor MYB44-like
SwissprotO231609e-70MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A3L6RS061e-180A0A3L6RS06_PANMI; Uncharacterized protein
STRINGPavir.Ab00649.1.p1e-162(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.18e-69myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]