PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG090400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 305aa    MW: 33018.2 Da    PI: 6.2467
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG090400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-072522852154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp+++++++L +++gL+ +q+ +WF N+R +
  Pavir.1KG090400.1.p 252 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 285
                          469*****************************87 PP
2ELK26.91.1e-09206227122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++L+++Y+++L+++++E++
  Pavir.1KG090400.1.p 206 ELKNELKQGYKEKLVDIREEIL 227
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194185IPR005540KNOX1
PfamPF037901.4E-164481IPR005540KNOX1
SMARTSM012566.2E-2695150IPR005541KNOX2
PfamPF037914.5E-16103149IPR005541KNOX2
PROSITE profilePS5121310.057206226IPR005539ELK domain
SMARTSM011880.0023206227IPR005539ELK domain
PfamPF037891.8E-6206227IPR005539ELK domain
PROSITE profilePS5007111.353226289IPR001356Homeobox domain
SMARTSM003893.4E-10228293IPR001356Homeobox domain
SuperFamilySSF466897.27E-16228291IPR009057Homeodomain-like
CDDcd000861.51E-11229290No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24233290IPR009057Homeodomain-like
PfamPF059208.3E-18246285IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSFHYPDHGL SMDAAAAAAA AVAAASSPNP SGFSPGGVGG EREKAAIAAH PLYERLLEAH  60
VACLRVATPV DQLPRIDAQI AARPPPLAAA AGAAAAGGPS GGEELDLFMT HYVLLLCSFK  120
EQLQQHVRVH AMEAVMGCWE LEQSLQSLTG ASPGEGTGAT MSDDEDNQVD SEANMFDGNE  180
GSDGMGFGPL ILTEGERSLV ERVRQELKNE LKQGYKEKLV DIREEILRKR RAGKLPGDTA  240
SILKAWWQAH SKWPYPTEDD KARLVQETGL QLKQINNWFI NQRKRNWHSN PTSSGEKTKK  300
KRLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282301RKRNWHSNPTSSGEKTKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.194800.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG090400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813953.10.0homeobox protein knotted-1-like 2
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A2T7F2T60.0A0A2T7F2T6_9POAL; Uncharacterized protein
TrEMBLA0A2T8KU590.0A0A2T8KU59_9POAL; Uncharacterized protein
STRINGPavir.J26794.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-145KNOTTED1-like homeobox gene 3