PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG089500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARR-B | ||||||||
Protein Properties | Length: 637aa MW: 69162.3 Da PI: 6.6604 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.5 | 6.2e-28 | 210 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl Pavir.1KG089500.1.p 210 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 263 79*******************.********************************8 PP | |||||||
2 | Response_reg | 79.5 | 1.2e-26 | 28 | 136 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ +++l+++l + +y +v+++ ++ al+ll+ek+ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + Pavir.1KG089500.1.p 28 VLAVDDDPTCLKVLENLLLRCQY-HVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMK 115 799********************.***************888888*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l++ Pavir.1KG089500.1.p 116 GITHGACDYLLKPVRIEQLRT 136 *******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.9E-202 | 1 | 636 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-42 | 25 | 168 | No hit | No description |
SuperFamily | SSF52172 | 7.83E-35 | 25 | 146 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.0E-32 | 26 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.159 | 27 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.0E-24 | 28 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.38E-27 | 29 | 141 | No hit | No description |
SuperFamily | SSF46689 | 6.09E-20 | 207 | 267 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.34 | 207 | 266 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 208 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 210 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-6 | 212 | 262 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MTVEEVKLQG KANGGHGARD QFPVGMRVLA VDDDPTCLKV LENLLLRCQY HVTTTGQAAT 60 ALKLLREKKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGET QTVMKGITHG 120 ACDYLLKPVR IEQLRTIWQH VVRRKSSDAK NHGNDNDDSG KKLQLASAEG DNGGVNRNKR 180 TSRKGRDDNG DEGDDSDDSN ENGDSSTQKK PRVVWSVELH RKFVAAVNQL GIDKAVPKKI 240 LDLMNVENIT RENVASHLQK YRLYLKRLSA DASRQANLTA AFGGRNPAYV NMGLEAFRQY 300 NAYGRYRPVP TPNHSQSNNL LARMNSPSAF GMHGLLPSQS LQIGHTQNNL NTSLGNVGGM 360 NNGNLIRGAH MPLQDSSKCF PTGPSGNSFA NISNGTTLVP TNNLPLHSLE PSNQQHLGRM 420 HSSSTDPFNS FVGESPQFPD LGRCNTTWPT AVSSSNVHEL GQKDSMSQPN LHVNAPKLEP 480 LSSFTEASSQ IPLLGNEMQG QVASLASTGL PMPFNQEAVP FTYGSSANSR EMLNNNLALS 540 NSGINSSLPN LRIDNSVVPR QTLDGGNSGG GVPPLQDGRI DQQAVSSQLN YNNNLMGTSR 600 LQRGLSGGLD DIVVDMFRPD RADDGVPFID GDWELV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-25 | 206 | 269 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.871 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG089500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB062095 | 0.0 | AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds. | |||
GenBank | HQ858745 | 0.0 | HQ858745.1 Zea mays clone UT1443 ARR-B transcription factor mRNA, partial cds. | |||
GenBank | HQ858760 | 0.0 | HQ858760.1 Zea mays clone UT1502 ARR-B transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802594.1 | 0.0 | two-component response regulator ORR24-like | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2T7F2S7 | 0.0 | A0A2T7F2S7_9POAL; Two-component response regulator | ||||
STRING | Pavir.Ab00568.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-108 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG089500.1.p |
Publications ? help Back to Top | |||
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