PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG080800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 385aa MW: 39282 Da PI: 7.1754 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1.1e-05 | 15 | 54 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedC..qqllCedClleeHkg..Htvv 40 r+C ++ ++ +C++C + +lC+ C e H + H++v Pavir.1KG080800.1.p 15 RRCGACGGSPAAAHCRTCpgGAYLCAGCDAE-HARagHERV 54 79****************7778*********.*77889875 PP | |||||||
2 | zf-B_box | 24.2 | 7.2e-08 | 54 | 99 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC+ C +H H++vp+ Pavir.1KG080800.1.p 54 VWVCEVCERAPAAVTCRADAAALCAACDADIHDAnplarrHERVPV 99 689*****************************44788888999986 PP | |||||||
3 | CCT | 71 | 3e-24 | 290 | 333 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpRvKGrF+k+a Pavir.1KG080800.1.p 290 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRVKGRFAKRA 333 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.034 | 12 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.865 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.3E-6 | 53 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.9E-9 | 57 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.986 | 290 | 332 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.0E-18 | 290 | 332 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEVGLAAGYW GVGGRRCGAC GGSPAAAHCR TCPGGAYLCA GCDAEHARAG HERVWVCEVC 60 ERAPAAVTCR ADAAALCAAC DADIHDANPL ARRHERVPVQ PIGAAAPAVD PLLFSAVVAE 120 EKDADAALAG MLAGRAVGGA NSKVNGKLDF LFTDVMDPFL GQGFARFVHA DSVVPSNGPI 180 GGALDLDFGG AAAAAVATKP SYSSYTAASL GHSGSSSEVG LVPDAICGRG GSVTGGVIEL 240 DFAQSKAGYL PYAAATPTHS VSSLDAGAVP DRSDGGVVGS RVAAAAVESR EARLMRYREK 300 RKNRRFEKTI RYASRKAYAE SRPRVKGRFA KRADDNDADA DAEAAGFPNA ATAAAAPPPK 360 QPQPAAYHSY VLDFAAGYGV VPTF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4183 | 4e-34 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG080800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109630 | 1e-52 | AK109630.1 Oryza sativa Japonica Group cDNA clone:002-138-D02, full insert sequence. | |||
GenBank | AP004838 | 1e-52 | AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05. | |||
GenBank | AP014958 | 1e-52 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-52 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818683.1 | 1e-169 | zinc finger protein CONSTANS-like | ||||
TrEMBL | A0A2T7F2Q5 | 1e-180 | A0A2T7F2Q5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QHQ5 | 1e-180 | A0A3L6QHQ5_PANMI; Zinc finger protein CONSTANS-LIKE 5-like | ||||
STRING | Pavir.Aa03360.1.p | 1e-172 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3844 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 9e-16 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG080800.1.p |