PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG065000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 442aa MW: 50536.9 Da PI: 9.2066 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.2e-07 | 33 | 57 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C ++r G C++ d+C+FaHg+ Pavir.1KG065000.1.p 33 YKTKMCALWQR-GGCSR-DTCSFAHGR 57 9**********.*****.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-12 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.3E-5 | 31 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.629 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKMCAL WQRGGCSRDT CSFAHGRAEL 60 RRFPGSRTSF PPRAGRGDYR GGDFRERFDR RRSPHRRHSL DRDSRGHRPL HDRRPTSQER 120 ESSYSRSPSR KSDRRHDKNP DDGETNSSRS LSVSDKNDDR KKEKILSGDD KEDQEIQLKQ 180 IRQDTELLRE DKSHLENILD EKNAEVRKIS SRVNDLDLQI RKEKEECHRM TSKIKKFIKA 240 HARFLKAQEE LKRSQARFER LGDLLASDIL KRGANEEVSS VNVDEDPNGP YERSPNAATA 300 KKRSIPYSTS EEAKAVKKRR DRDSEFDKSS KGTEPTKALY LKKKLWEDEK DKIGNVVSSA 360 NTDKVKDSPA KHVLPSTGMA AHAVDDLFEA VELEDRHDPI NTSVENDAGD ETRSPAMPPQ 420 PPPVVNAYEQ YEGDDEDVDV E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 319 | KKRSIPYSTSEEAKAVKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7758 | 0.0 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG065000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040240 | 0.0 | BT040240.1 Zea mays full-length cDNA clone ZM_BFc0072P19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815366.1 | 0.0 | zinc finger CCCH domain-containing protein 13-like isoform X1 | ||||
Swissprot | Q6H7U2 | 0.0 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A2T8KU07 | 0.0 | A0A2T8KU07_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa03280.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 3e-20 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG065000.1.p |
Publications ? help Back to Top | |||
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