PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG062100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Whirly | ||||||||
Protein Properties | Length: 230aa MW: 25339.1 Da PI: 10.289 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 185 | 1.3e-57 | 54 | 191 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 v+k+kaal++++++p+f++++sg +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+ Pavir.1KG062100.1.p 54 VFKGKAALSIHPILPSFSKMESGGSRMNRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVK 143 9***************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 k+l++ Pl sG+fvn++v n+++k+ +++svP++kaefav+r++l+ Pavir.1KG062100.1.p 144 KSLSITPLGSDSGYFVNITVLNNMQKTTDRLSVPITKAEFAVMRTALS 191 *********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.5E-72 | 42 | 207 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.71E-71 | 45 | 229 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-57 | 54 | 188 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MLRIFRFLPS ASRRGFDLKE PLWSGSLTFI QAVSTSAGNL DENLSGKKFA SYTVFKGKAA 60 LSIHPILPSF SKMESGGSRM NRNGSVMLTF FPAVGQRKYD YTKKQLFALS PTEVGSLISL 120 GPAESCEFFH DPSMKSSHEG QVKKSLSITP LGSDSGYFVN ITVLNNMQKT TDRLSVPITK 180 AEFAVMRTAL SFALPHIMGW DQVLTHHPAP PASSKPRVER PHPDSEWER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3n1h_A | 9e-75 | 46 | 208 | 9 | 170 | StWhy2 |
3n1i_A | 9e-75 | 46 | 208 | 9 | 170 | protein StWhy2 |
3n1j_A | 9e-75 | 46 | 208 | 9 | 170 | Protein StWhy2 |
3n1k_A | 9e-75 | 46 | 208 | 9 | 170 | protein StWhy2 |
3n1l_A | 9e-75 | 46 | 208 | 9 | 170 | protein StWhy2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18899 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG062100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963457 | 0.0 | EU963457.1 Zea mays clone 262942 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798789.1 | 1e-162 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 7e-77 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2S3GLT5 | 1e-161 | A0A2S3GLT5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00418.1.p | 1e-169 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-76 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG062100.1.p |