PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG056900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 361aa    MW: 41248.4 Da    PI: 8.2011
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG056900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.48.1e-12101191190
                 FAR1   1 kfYneYAkevGFsvrkskskks.........krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                          ++Yn Y+ e+GF +r  k+++s         ++++    ++++C ++g++++e k+        ++ rt+C akl++ ++ d+ w+v + 
  Pavir.1KG056900.1.p 101 EYYNLYSWECGFGIRCGKKRYSmtreslklpQEKRYQLGQELNCCCSGRPSRELKT--------MSARTNCPAKLRLGRTADHGWVVVEH 182
                          69****************99998888887776677778889999999999988777........99************************ PP

                 FAR1  82 eleHnHela 90 
                          +  HnHe++
  Pavir.1KG056900.1.p 183 NPIHNHEMS 191
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-8101191IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEGDGCLWRS GNLNSQKRRN SRSVGGRREN SGGGSESTDA SFDLNNSIRN CVSSGPDHRG  60
KELGKTSALE HALMKFADRN SEYIINPAVG TEFDDCEEAY EYYNLYSWEC GFGIRCGKKR  120
YSMTRESLKL PQEKRYQLGQ ELNCCCSGRP SRELKTMSAR TNCPAKLRLG RTADHGWVVV  180
EHNPIHNHEM SESYGENKLW PSHTHLDKYT RSLVRMLREN NVPITKLYSI LGTFFGKMEN  240
VPTTKRCLKN LCHKINREQA ENDIKKTLDL FGEFMKDDPG FMYSIDQDED GRIKTMIWTN  300
SKSRMQYEHF GDAITFDTTY KTNMYEMPFG LFVVSFVGRG GWLANVGIQW DSRSSPMAWG  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG056900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181332.11e-101putative protein FAR1-RELATED SEQUENCE 10 isoform X2
TrEMBLA0A3L6PZI21e-112A0A3L6PZI2_PANMI; Uncharacterized protein
STRINGPavir.J14899.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-23FAR1-related sequence 5