PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG049900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 237aa    MW: 26578.1 Da    PI: 9.6398
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG049900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-092081756
                         --HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  7 ftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         f ++++e++e+  +  +n+ p++ ++eeLA+k            ++ +qV++WF+NrR+  +
  Pavir.1KG049900.2.p 20 FLPDEVEQMEARLQplRNPSPDRVAMEELARKFsasaerigkvVIQPKQVRNWFCNRRYYSR 81
                         667788889999886569************************9***************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.0E-41387IPR001356Homeobox domain
PROSITE profilePS5007110.091983IPR001356Homeobox domain
CDDcd000862.82E-71981No hitNo description
Gene3DG3DSA:1.10.10.607.0E-82078IPR009057Homeodomain-like
SuperFamilySSF466894.28E-92082IPR009057Homeodomain-like
PfamPF000468.8E-72081IPR001356Homeobox domain
PfamPF167192.8E-12131209IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRPPSARSD WVLAAAPFRF LPDEVEQMEA RLQPLRNPSP DRVAMEELAR KFSASAERIG  60
KVVIQPKQVR NWFCNRRYYS REGKAARAAQ AAQGDLAARR VEAYRQQLAA GSSAAVHAGS  120
SSGKISMEGS QIKYEAKSDR DGSWYDVDVI SFRTSELGEL EAIVQLSGFG AEEAGWVNAR  180
TCLRQRSVPF RATECELVRC WDFVLCYKEF VYLRNLRGRP RAFERQASDF ASAIQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-14130209282SHH1 SAWADEE
4iur_B1e-14130209282SHH1 SAWADEE
4iut_A1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-14130209282SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG049900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.18e-56protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.18e-56protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.18e-56protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.18e-56protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2S3GN361e-125A0A2S3GN36_9POAL; Uncharacterized protein
STRINGPavir.Ab00825.1.p1e-163(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.36e-34sequence-specific DNA binding transcription factors;sequence-specific DNA binding