PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG047300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 25216.2 Da PI: 10.7566 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.6e-18 | 125 | 179 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++ q Le+ F+ ++ +s+ e++eLA+++gL+ rqV vWFqNrRa+ k Pavir.1KG047300.1.p 125 RKKLRLNAAQAAMLEDSFRAHNILSHGEKQELARRVGLSARQVEVWFQNRRARTK 179 67788999*********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.5 | 5.5e-36 | 125 | 213 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++ q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ + Lr+ Pavir.1KG047300.1.p 125 RKKLRLNAAQAAMLEDSFRAHNILSHGEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLTDENARLRRDLAGLRA 213 69**********************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.763 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-14 | 123 | 185 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.19E-18 | 124 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-17 | 125 | 179 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-15 | 125 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.93E-12 | 125 | 182 | No hit | No description |
PRINTS | PR00031 | 2.1E-6 | 152 | 161 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-6 | 161 | 177 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.0E-8 | 181 | 213 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.8E-14 | 181 | 224 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSSLTTAGSA EERHYSVSAE EFGTHLSLGI GGGPGGGGGG GRPRPRTVQL FGEVLSLEGD 60 NNGEPTAAPS GRKRRDRSGS GAAAVPASRQ QNKKARKVKD ADDDGDRRSL TSGGGGGGGG 120 SGAGRKKLRL NAAQAAMLED SFRAHNILSH GEKQELARRV GLSARQVEVW FQNRRARTKL 180 KQTEVDCELL RRWCDRLTDE NARLRRDLAG LRAAPARLAV CASCCDKKAQ VAVAAGEMA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 181 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14724 | 6e-35 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG047300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093288 | 5e-32 | FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797072.1 | 1e-109 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 1e-53 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A3L6RW69 | 1e-120 | A0A3L6RW69_PANMI; Putative homeobox-leucine zipper protein HOX26 | ||||
STRING | Pavir.J13660.1.p | 1e-170 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 5e-30 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG047300.1.p |