PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG042900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 454aa MW: 50163.6 Da PI: 6.3998 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.2 | 9e-34 | 254 | 308 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++LGG+ekAtPk +l+lmkv+gLt++hvkSHLQkYR Pavir.1KG042900.1.p 254 KPRLRWTLELHERFVEAVNKLGGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRF 308 79****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.484 | 251 | 311 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-17 | 253 | 308 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-31 | 253 | 309 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-25 | 254 | 308 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-9 | 256 | 307 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.1E-21 | 344 | 390 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MAQTCTTPQP SAHSLFSAKS DHCGSAYDPQ SSCASAQSSS VKSEMIGSLS LTKILPLDLH 60 KRSPESNPER SASRASQTQL SDPVSSSSSS TFHTSMFSSF RTSSESCRQK GALPFLPHPP 120 KCEQQQQISA QQSSSSSSLL FGADLSNGSH DDAEHSGDLK DFLNLSGDVS EGSFHGESDA 180 MAFSEQMEFQ FLSEQLGMAI TNNEESPRLD DIYDRPPQTS SCTVPSYSNQ ENLPSPVSVV 240 KVQLSSSRAE ACNKPRLRWT LELHERFVEA VNKLGGPEKA TPKGVLKLMK VEGLTIYHVK 300 SHLQKYRFAK YLPETKEDKK SSSEGKKSQL VIPGNDSDKK KSLQVAEALR MQMEVQKQLH 360 EQLEVQRQLQ LHIEEHARYL QKILEQQQKA RDSLSTTRNS TKEKEEAPES TEKEETKMKD 420 DTSSDPLSGR KISDPNLECA TRESQVDNKS TNV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-26 | 254 | 311 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6857 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout all stages of plant growth. Increased expression in leaves before the booting stage. {ECO:0000269|PubMed:26082401}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the root cap and in the exodermis of the root, in the root tip of lateral roots, in the mesophyll cells of the leaf, in pollen, vascular cylinder of the anther and the veins of the lemma, palea and pistils, and in the xylem and phloem regions of large vascular bundles, small vascular bundles and diffuse vascular bundles in node I (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG042900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799346.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 3-like | ||||
Swissprot | Q6YXZ4 | 1e-173 | PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3 | ||||
TrEMBL | A0A2S3GL33 | 0.0 | A0A2S3GL33_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J14911.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4526 | 37 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 3e-78 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG042900.1.p |
Publications ? help Back to Top | |||
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