PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1KG040700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 513aa MW: 54303.1 Da PI: 5.4905

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1KG040700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.7	4.8e-28	271	320	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l++yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki++ Pavir.1KG040700.1.p 271 EKTVSLEVLQRYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKIAK 320 799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.632	256	341	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-24	273	320	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-19	404	472	No hit	No description
SMART	SM00666	4.8E-17	405	498	IPR000270	PB1 domain
PROSITE profile	PS51745	18.725	405	498	IPR000270	PB1 domain
Pfam	PF00564	2.3E-14	406	475	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.9E-23	406	472	No hit	No description
CDD	cd06407	4.08E-31	406	473	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSEVSDILTT VGEAHRLPLA QAWVRCKRCN TSTEHAATLT AAGTPFYLAG DADQILIGFR 60 EACVEHHLRP GRGGLVEEAA AARGPRFCAD VTKYSMDAYP LAHHARFCGL AGCLAVCVQL 120 RRGDDDDDAS MDDGSREQCV LEFFLPTDCR DGAAQKAAAD AVAATITELF GDGHLKAITI 180 SGLQDLAFEI VADGECVLRH DGVVMADAPE LELNDHGGDE RDSDEEGLHL ATAVGAADIE 240 APKMNDGDEN GDKDPRSQIV EEKKKAKRKG EKTVSLEVLQ RYFSGSLKDA ARSLGVCPTT 300 MKRICRQHGI SRWPFRKIAK ANRSLDKIKR VFESVPGSTN PMTASTAAAA VSHQAPAAAT 360 ARGGPALPCL SSALRVTSSQ GSCQAPPPPR DAALRTPLRG VDAGVVTVKA SYRGDIVRFR 420 VPSSAGVATV KGEVAKRLGL EASEFDVKYL DDDNEWVLLS CDADFQECLE VVPAVSGAAS 480 SSGSALAQPV VRLMVQEAPE NHGSSCAVQS SH*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSEVSDILTT VGEAHRLPLA QAWVRCKRCN TSTEHAATLT AAGTPFYLAG DADQILIGFR  60
EACVEHHLRP GRGGLVEEAA AARGPRFCAD VTKYSMDAYP LAHHARFCGL AGCLAVCVQL  120
RRGDDDDDAS MDDGSREQCV LEFFLPTDCR DGAAQKAAAD AVAATITELF GDGHLKAITI  180
SGLQDLAFEI VADGECVLRH DGVVMADAPE LELNDHGGDE RDSDEEGLHL ATAVGAADIE  240
APKMNDGDEN GDKDPRSQIV EEKKKAKRKG EKTVSLEVLQ RYFSGSLKDA ARSLGVCPTT  300
MKRICRQHGI SRWPFRKIAK ANRSLDKIKR VFESVPGSTN PMTASTAAAA VSHQAPAAAT  360
ARGGPALPCL SSALRVTSSQ GSCQAPPPPR DAALRTPLRG VDAGVVTVKA SYRGDIVRFR  420
VPSSAGVATV KGEVAKRLGL EASEFDVKYL DDDNEWVLLS CDADFQECLE VVPAVSGAAS  480
SSGSALAQPV VRLMVQEAPE NHGSSCAVQS SH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1KG040700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823617.1	0.0	protein NLP3-like
TrEMBL	A0A2S3GLE7	0.0	A0A2S3GLE7_9POAL; Uncharacterized protein
STRING	Pavir.Ab00331.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-53	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.1KG040700.1.p