PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG034400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BES1 | ||||||||
Protein Properties | Length: 579aa MW: 65106.6 Da PI: 5.3507 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 92.6 | 9.1e-29 | 1 | 114 | 29 | 139 |
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslq.sslkssalaspvesysaspks 116 ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +p+ + + g ++ as ++ ++l+s+a+ +p +s+++ Pavir.1KG034400.1.p 1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSNQPPlPPPPQLGMFQVASGDAPAFiNALNSYAIGTP-----SSLQT 85 79**********************************************99999*************99788888888877.....56677 PP DUF822 117 ssfpspssldsislasa......asllpv 139 ++ +spsslds+ ++ + ++++v Pavir.1KG034400.1.p 86 DDCLSPSSLDSVVAERSiktenfGNSSSV 114 88888888888877655444334333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.5E-29 | 1 | 119 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 7.8E-172 | 138 | 572 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.36E-167 | 139 | 572 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 2.8E-83 | 162 | 533 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 176 | 190 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 197 | 215 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 219 | 240 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 312 | 334 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 385 | 404 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 419 | 435 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 436 | 447 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 454 | 477 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.2E-53 | 492 | 514 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRSSNQPPLP PPPQLGMFQV 60 ASGDAPAFIN ALNSYAIGTP SSLQTDDCLS PSSLDSVVAE RSIKTENFGN SSSVNSLNCM 120 DNNQLLRSSA MLAGDYTKTP YIPVYASLPM GIINSHCQLV DPEGVRAELR HLKSLNVDGV 180 VVDCWWGIVE AWIPRKYEWS GYRDLFGIIK EFKLKVQVVL SFHGSGETGS GDMLISLPKW 240 IMEIAKENQD IFFTDREGRR NTECLSWGID KERVLRGRTG IEVYFDFMRS FHMEFRNLSE 300 EGLISAIEIG LGASGELRYP SFPERMGWKY PGIGEFQCYD RYMQKNLRQS ALSRGHLFWA 360 RGPDNAGYYN SRPHETGFFC DEGDYDSYYG RFFLNWYSAI LINHVDQVLS LAALAFDGAE 420 IVVKIPSIYW WYRTASHAAE LTAGFYNPTN RDGYSPVLKM LKKHSIILKL VCYGAEFTVQ 480 ENDEAFADPE GLTWQVMNAA WDHGLPLCIE STLPCLDGDM YSQILDTAKP RNDPDRHHAS 540 FFAYRQQPPF LLQRDACYPE LRTFVKCMHG EAPQNGED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-124 | 141 | 571 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG034400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811466.1 | 0.0 | beta-amylase 8 isoform X2 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A2S3GL09 | 0.0 | A0A2S3GL09_9POAL; Beta-amylase | ||||
STRING | Pavir.Aa03184.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 0.0 | beta-amylase 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG034400.1.p |
Publications ? help Back to Top | |||
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