PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG032700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 355aa MW: 37610.9 Da PI: 5.2315 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 68.3 | 1.3e-21 | 250 | 312 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++ Pavir.1KG032700.1.p 250 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 312 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.0E-28 | 1 | 96 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 7.0E-21 | 127 | 232 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-17 | 247 | 311 | No hit | No description |
Pfam | PF00170 | 6.8E-20 | 250 | 312 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 7.2E-21 | 250 | 314 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.288 | 252 | 315 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-11 | 253 | 310 | No hit | No description |
CDD | cd14702 | 6.79E-26 | 255 | 305 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 257 | 272 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MGSNDPSTPS KAPKASEQDQ PSATTSGATA SVYPEWPSFQ AYSAIPPHGF FPPTVAANPQ 60 AHPYMWGAQP MVPPYGTPPS PYVMYPPGTV YAHPSTAPGM HPFSHYPMPT NGHAETPGAA 120 PSAPEMNGKN EPGRMSAPSA NGITSHSESG SESESEGSDA NSQNDSHSKD NDGKEDGSSQ 180 NGISYSASQG MLNQTMPMIP IQPGAMVGVP GSTANLNIGM DYWTAPGSAT VPATQGKATS 240 GSARGDQWDE RELKKQKRKQ SNRESARRSR LRKQAECEEL GQRAESLRSE NSSLRAELER 300 IRKEYEQLLS QNASLKEKLG ATSDSIPDMN EQNDGGGSGY KKQPDSDAQP GNES* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 272 | RRSRLRK |
2 | 266 | 273 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18613 | 0.0 | leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG032700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728260 | 0.0 | KJ728260.1 Zea mays clone pUT6537 bZIP transcription factor (bZIP14) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952026.1 | 0.0 | transcription factor HBP-1a | ||||
Swissprot | P23922 | 1e-148 | HBP1A_WHEAT; Transcription factor HBP-1a | ||||
TrEMBL | K3YTP1 | 0.0 | K3YTP1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa03436.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2147 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32150.1 | 5e-87 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG032700.1.p |
Publications ? help Back to Top | |||
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