PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T146100.4
Common NamePOPTR_0004s11510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 332aa    MW: 36646 Da    PI: 8.1107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T146100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.12.3e-3248158289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++    +sn+  +       
  Potri.T146100.4  48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPGNFSLNHQAMLGSSNEVGAsrsskev 141
                      689*************************************************************999999995555555555433332222223 PP

              TCP  89 ................k 89 
                                      +
  Potri.T146100.4 142 fkmnngvdwedtsgftR 158
                      33333333333333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.46950108IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-2950190IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MITSSKQVDS PTKKEEDSND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPMPPGNFSL  120
NHQAMLGSSN EVGASRSSKE VFKMNNGVDW EDTSGFTRPS FWNADAILRA KSKEVMTDPV  180
NEKENWAKRD EEDKEDGSIE GNTAQALSSS FLQRASHSSL PGDIHNLNVV PLSSALSLSS  240
GSQILVCPPG TTQSYFPSHA TASMEIDPRQ INHFQWLTPS TQNLLPNSLT PSPYPISQSM  300
RPSQYFSVTP RVLHSQNSES PPDKDPQFPC K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1755109155Putative transcription factor PCF6
5zkt_B2e-1755109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T146100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449007.10.0transcription factor TCP13 isoform X2
RefseqXP_024454632.10.0transcription factor TCP13 isoform X2
TrEMBLA0A2K1R5630.0A0A2K1R563_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11510.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.22e-52plastid transcription factor 1