PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T146100.1
Common NamePOPTR_0004s11510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 366aa    MW: 40377.2 Da    PI: 7.7405
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T146100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.73.1e-3248149289
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ +++    +sn+  +       
  Potri.T146100.1  48 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPGNFSLNHQAMLGSSNEVGAsrsskev 141
                      689*************************************************************999999995555555555443332222223 PP

              TCP  89 .......k 89 
                             +
  Potri.T146100.1 142 fkmnngvD 149
                      33333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2950190IPR005333Transcription factor, TCP
PROSITE profilePS5136931.46950108IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MITSSKQVDS PTKKEEDSND GKISKASSSS APWLRLKDPR IVRVSRAFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLNA AKHEIDELPP LPMPPGNFSL  120
NHQAMLGSSN EVGASRSSKE VFKMNNGVDW EDTSGFTRPS FWNADAILRA KSKEVMTDPV  180
NEKENWAKRD EEDKEDGSIE GNTAQALSSS FLQRASHSSL PGLINNAMPY GSFFHLEPQS  240
FPLSHMGNHG FATQTGDIHN LNVVPLSSAL SLSSGSQILV CPPGTTQSYF PSHATASMEI  300
DPRQINHFQW LTPSTQNLLP NSLTPSPYPI SQSMRPSQYF SVTPRVLHSQ NSESPPDKDP  360
QFPCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1855109155Putative transcription factor PCF6
5zkt_B8e-1855109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T146100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305384.10.0transcription factor TCP13 isoform X1
RefseqXP_024449006.10.0transcription factor TCP13 isoform X1
RefseqXP_024454630.10.0transcription factor TCP13 isoform X1
RefseqXP_024454631.10.0transcription factor TCP13 isoform X1
TrEMBLB9H0G50.0B9H0G5_POPTR; Uncharacterized protein
STRINGPOPTR_0004s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-51plastid transcription factor 1