PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T137400.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 259aa MW: 29986.4 Da PI: 9.3553 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 14 | 106 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F+ k+y++++d+++++lisw + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ll+ Potri.T137400.2 14 FVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQKQLLK 98 9********************999*****************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i r+k++ Potri.T137400.2 99 NIVRRKHS 106 ****9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.3E-51 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.53E-34 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.0E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-18 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-18 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.3E-18 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MMEANNNNNI VAPFVLKIYQ MVSDPTTDSL ISWGRANNSF IVIDPLDFSQ RILPVYFKHN 60 NFSSFVRQLN TYGFRKVDPD RWEFANEWFL RGQKQLLKNI VRRKHSSNNK GSSYMQVNIK 120 GEDFDDEDII MEIARLKQEQ KALEQELEGM NKRLEATERR PQQMMAFIYK VVEDPDLLPR 180 MILEKERTRQ IKDKKQRLMI SSSATSPSGM AISSTSTIIK SEVVHEEGSI GDLVHLQQAQ 240 WVQGLGQRWQ CCRKGIVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-27 | 4 | 103 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-27 | 4 | 103 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-27 | 4 | 103 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T137400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP014011 | 0.0 | KP014011.1 Populus simonii heat shock transcription factor C1 (HsfC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324418.2 | 1e-168 | heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 1e-93 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | B9ILM2 | 1e-167 | B9ILM2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0018s05770.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 3e-82 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T137400.2 |
Publications ? help Back to Top | |||
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