PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T111100.1
Common NamePOPTR_0016s04590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 285aa    MW: 29924.9 Da    PI: 9.7893
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T111100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.1e-073660226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C  f+ t  C++G++C+F H 
  Potri.T111100.1 36 KSKPCTKFFSTAGCPFGESCHFLHH 60
                     7789********************6 PP
2zf-CCCH24.35.3e-0893118227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      k +lC+ +     Ck+Gd+C+FaHg+
  Potri.T111100.1  93 KSRLCKKYNSAEGCKFGDKCHFAHGE 118
                      679*********************96 PP
3zf-CCCH34.53.4e-11251275126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+lC++fa+ G C +G rC+FaHg
  Potri.T111100.1 251 YKTKLCDNFAK-GSCTFGQRCHFAHG 275
                      9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.373461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-83660IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-1389121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-890122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.82691119IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-693118IPR000571Zinc finger, CCCH-type
SMARTSM003560.0193118IPR000571Zinc finger, CCCH-type
SMARTSM003223.1E-10160230IPR004087K Homology domain
PROSITE profilePS5008413.586161225IPR004088K Homology domain, type 1
SuperFamilySSF547916.28E-13162230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-14162230IPR004088K Homology domain, type 1
CDDcd001058.75E-13163226No hitNo description
PfamPF000134.6E-10163227IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.105.3E-16248281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-8249280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014250277IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7250276IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8251275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDTRKRGRPD FGTNGYGGFK KSKQEMDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHH  60
VPGGYKAVAQ MVNLGPTVAL PPVPNSSAPS AVKSRLCKKY NSAEGCKFGD KCHFAHGEWE  120
LGKAFVPSHN DPHAVGSVPG HLGGRVEPPP PGPATSFGVF ATTTRISVDA SLAGSIIGKA  180
GVHSKQICRQ TGIKLSIKDH ETNPNLKNIE LEGSLEQIAQ ASKMVEELVR VTSANAAAKS  240
SGGHANPGSN YKTKLCDNFA KGSCTFGQRC HFAHGAAELR KSSM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T111100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373740.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLU5FQC50.0U5FQC5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-89C3H family protein