PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.T078200.1

Common Name

POPTR_0017s04980g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 988aa MW: 108407 Da PI: 5.2958

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.T078200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Potri.T078200.1 598 AEKTVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-26	601	649	IPR003035	RWP-RK domain
SMART	SM00666	3.2E-21	885	967	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.5E-24	885	964	No hit	No description
PROSITE profile	PS51745	20.944	885	967	IPR000270	PB1 domain
SuperFamily	SSF54277	2.03E-21	885	969	No hit	No description
CDD	cd06407	2.06E-30	886	966	No hit	No description
Pfam	PF00564	1.8E-17	886	966	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MENPFSSKEK GTGYWASPRA QMDGVTPLDG SPRNLLLEDP FNNFSELMNF DIYAELCNNP 60 SAMDQMLDPF GMPSFPSTSY PSFDPGSSAA QNSAPVQNTT NAAGTSYNGG DKVVLQQINS 120 HFCYPSDSID TDDLGAKHSN DASQQNRFSN LTDHIIARPL APSLDERMLR ALSLLKVSSG 180 GGFLAQVWVP RRIGNQYMLS TTEQPYLLDE MLAGFREVSR TFTFPAEVKP GLTLGLPGRV 240 FISKVPEWTS NVIYYNKGEY LRAKQAADHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP 300 DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT 360 WIPCNYNEEA LDEIIKVRVR EANSRSSGKC VLCIEDTACY VNDRKMQGFV HACAEHYIEE 420 GQGIAGKALQ SNHPFFFSDV KAYDITEYPL VHHARKYGLN AAVAIRLRST YTGDEDYILE 480 FFLPVNIEGS SDQQLLLNNL SGTMQRICKS LRTVSETEFV RQECSEDGLP KEAVPSVRPM 540 SISKGSSQTA LSEGNLISAA KMLFNMSGSK NDQTESNSSN EQKMSGSRRQ VEKKRSTAEK 600 TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL 660 DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSDPA NHDVVSVRPA 720 PCTDGNNSTV KVENDECHIG SGGVLNESCV HVIDCSEDAK SAAMDAELCE QANFGSGPWA 780 CLENDITGSL AKAGNKWGMK NGGIILENLD SHFVSQSSSS LAKEMDTKME GDDGNVEHNQ 840 PTSSSMTDSS NGTGSMMHGS ISSSSSFEER KHSKVRTSFC DGDLKITVKA SYKEDIIRFK 900 FDPSAGCLQL YKEVSNRFKL QTGTFQLKYL DDEDEWVLLV SDSDLQECLE IMEYVGTRNV 960 KFLVRDAVAP FVMGSSGSSN SFLVGSS*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MENPFSSKEK GTGYWASPRA QMDGVTPLDG SPRNLLLEDP FNNFSELMNF DIYAELCNNP  60
SAMDQMLDPF GMPSFPSTSY PSFDPGSSAA QNSAPVQNTT NAAGTSYNGG DKVVLQQINS  120
HFCYPSDSID TDDLGAKHSN DASQQNRFSN LTDHIIARPL APSLDERMLR ALSLLKVSSG  180
GGFLAQVWVP RRIGNQYMLS TTEQPYLLDE MLAGFREVSR TFTFPAEVKP GLTLGLPGRV  240
FISKVPEWTS NVIYYNKGEY LRAKQAADHE VRGSFALPIF DPDEMSCCAV LELVTVKEKP  300
DFDSEMENVC HALEAVNLRS TAPPRLLPQC LSSNKRAALS EIADVLRAVC HAHRLPLALT  360
WIPCNYNEEA LDEIIKVRVR EANSRSSGKC VLCIEDTACY VNDRKMQGFV HACAEHYIEE  420
GQGIAGKALQ SNHPFFFSDV KAYDITEYPL VHHARKYGLN AAVAIRLRST YTGDEDYILE  480
FFLPVNIEGS SDQQLLLNNL SGTMQRICKS LRTVSETEFV RQECSEDGLP KEAVPSVRPM  540
SISKGSSQTA LSEGNLISAA KMLFNMSGSK NDQTESNSSN EQKMSGSRRQ VEKKRSTAEK  600
TVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLKKIQTVL  660
DTVQGVEGGL KFDPTAGGFI AGGAMMQEFD LRNGFVFQEK NLSNRNSDPA NHDVVSVRPA  720
PCTDGNNSTV KVENDECHIG SGGVLNESCV HVIDCSEDAK SAAMDAELCE QANFGSGPWA  780
CLENDITGSL AKAGNKWGMK NGGIILENLD SHFVSQSSSS LAKEMDTKME GDDGNVEHNQ  840
PTSSSMTDSS NGTGSMMHGS ISSSSSFEER KHSKVRTSFC DGDLKITVKA SYKEDIIRFK  900
FDPSAGCLQL YKEVSNRFKL QTGTFQLKYL DDEDEWVLLV SDSDLQECLE IMEYVGTRNV  960
KFLVRDAVAP FVMGSSGSSN SFLVGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.T078200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU231638	1e-112	CU231638.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006372780.2	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2K1R7I5	0.0	A0A2K1R7I5_POPTR; Uncharacterized protein
STRING	POPTR_0017s04980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.T078200.1
Entrez Gene	18106829

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]