PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T074200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 1525aa    MW: 174425 Da    PI: 5.4331
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T074200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.11.6e-1011281184765
              NAM    7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd 65  
                        h td el+  yLk+k+ ++++++ ++i++vd+yk++P++Lp+    e+++wyfF +r 
  Potri.T074200.1 1128 LHLTDAELM-LYLKRKICENSFKF-DTIPDVDVYKWDPEELPELSPLENRQWYFFGPRG 1184
                       6779****9.9************9.89***************76667899*****8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.07E-39106253IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010427.274115253IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101403.0E-23115219IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002554.8E-37116250IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015824.2E-42116281IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525406.67E-60272537IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.4E-31299545IPR002182NB-ARC
PRINTSPR003641.2E-24309324No hitNo description
Gene3DG3DSA:3.40.50.3002.1E-6309459IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.2E-24385399No hitNo description
PRINTSPR003641.2E-24478492No hitNo description
SuperFamilySSF467851.2E-18514617IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520581.12E-38597896IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.7E-29645884IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.2E-24855871No hitNo description
SuperFamilySSF522004.05E-219771121IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010415.3069831119IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002556.1E-119841122IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.9E-79861098IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015821.7E-159861127IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF1019411.03E-1911291223IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1525 aa     Download sequence    Send to blast
MLDLKIHYKT RINSIVRCVA PPLLLTGRCL CCPMRVRYPF HFFLYFFSTE SPSSLQCKIR  60
KKIIGNLPIR VLDLKEPEKI RSHWNKKKVK GFGRIFMAST SVQGITSSSS SPPLYKYDVF  120
LSFRGKDTRN NFTSHLQTNL AQRGIDAYMD DRELERGKTI EPALWKAIEE SRFSVIIFSR  180
DYASSPWCLD ELVKIVQGMK EMGHTVLPVF YDVDPSETYE KAFVEHEQNF KENLEKVQIW  240
KDCLSTVTNL SGWDIRNRNE SESIKIIAEY ISYKLSVTLP TISKKLVGID SRVEVLNGYI  300
GEEVGEAIFI GICGMGGIGK TTVSRVLYDR IRWQFEGSCF LANVREVFAE KDGPRRLQEQ  360
LLSEILMERA SVWDSSRGIE MIKRRLRLKK ILLILDDVDD KKQLEFLAAE PGWFGPRSRI  420
IITSRDKNVF TGNDDTKIYE AEKLNDDDAL MLFSQKAFKN DQPAEDFVEL SKQVVGYANG  480
LPLALEVIGS FLYGRSIPEW RGAINRMHEI PDCKIMDVLR ISFDGLHESD QKIFLDIACF  540
LKGFKKDRIT RILDSCGFNA GIGIPVLIER SLISVYGDQV WMHNLLQIMG KEIVRCEDPK  600
EPGKRSRLWT YEDVSLALMD NTGKEKIEAI FLDMPGIKEA QWNMKAFSKM SRLRLLKIDN  660
VQLSEGPEDL SKELRFLEWH SYPSKSLPAG LQVDGLVELH MANSSIEQLW YGCKSAVNLK  720
VINLSNSLNL SKTPDLTGIP NLSSLILEGC TSLSEVHPSL GRHKNLQYVN LVNCKSFRIL  780
PSNLEMESLK VFTLDGCTKL EKFPDIVGNM NCLMELCLDG TGIAELSSSI HHLIGLEVLS  840
MNNCKNLESI PSSIGCLKSL KKLDLSGCSE LKNIPENLGK VESLEEFDGL SNPRPGFGIA  900
FPGNEIPGWF NHRKLKEWQH GSFSNIELSF HSFQPGVKVK NCGVCLLYYS SSKSSARFIV  960
ASKEASSSSF TSSLSVSSSY RQWVQDFFLS FRGADTSNDF IHLNTALALR VIIPDDKELE  1020
KVMAIRSRLF EAIEESGLSI IIFARDCASL PWCFDELVKI VGFMDEMRSD TVFPVSYDVK  1080
QSKIDDQTES YTIVFDKDEE DFRENEEKVQ RWTNILTEVL FSSGPRRLHL TDAELMLYLK  1140
RKICENSFKF DTIPDVDVYK WDPEELPELS PLENRQWYFF GPRGRAPRGE RTDWEMQEYT  1200
LNEKELKGCT NVQDCYALYK LYKNKKRALT STSQQPQNCN HIRRMALHPH SPPDYELDFQ  1260
EIHLFGPQPI FSETMQPIEN LQFGGGGFSE MDRWYETMFL RDNIEPADQE RCLLGKVKKG  1320
SYYSAIRFGL LQYDIDFAGL RFLEASQVLI IFYTRDMFME SWRKNNECLD VVFEEVRPWA  1380
ETDTTLNQMA WITITNLPII GWNCRCLPKI LERTGQMIGY DKTTLKHFEL SQSRILIGTQ  1440
LDKVNKVIVL QLNNQIYQVK IEEMDPLHYP IASSISYTMD DFQTSLEQGD GDDEEDSVDV  1500
ADDVDIDEDR AGVFQSVART LGDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A6e-4411711321169TIR-NB-LRR type resistance protein RPV1
5ku7_B6e-4411711321169TIR-NB-LRR type resistance protein RPV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T074200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5132240.0DQ513224.1 Populus trichocarpa clone 528929 TIR-NBS-LRR-TIR type disease resistance protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448366.10.0TMV resistance protein N
RefseqXP_024448367.10.0TMV resistance protein N
TrEMBLQ19PL90.0Q19PL9_POPTR; TIR-NBS-LRR-TIR type disease resistance protein
STRINGPOPTR_0548s00200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3910
Representative plantOGRP1823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.14e-90WRKY family protein