PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.T054700.1 | ||||||||
Common Name | POPTR_0219s00200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 13884.3 Da PI: 11.0428 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6.1e-17 | 11 | 101 | 10 | 97 |
HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + +s+ l++p+k++++ g ++ + desg +W++++++rkk++ vl+kGW+ Fv+ ++Lk+gD + F+l+++ ++++ +v+ Potri.T054700.1 11 TDTSKTLSVPRKYLRSLpsfkG---GHAVEFQAIDESGFVWTFQCSIRKKGQYpkPVLSKGWRAFVRNKKLKVGDKIKFSLNQTAAATPFYRVR 101 4556679********9997643...35678999************9999999899**************************9998888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.278 | 2 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-17 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-15 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.3E-10 | 4 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.09E-18 | 4 | 91 | No hit | No description |
Pfam | PF02362 | 2.3E-14 | 12 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MTTFSKILGK TDTSKTLSVP RKYLRSLPSF KGGHAVEFQA IDESGFVWTF QCSIRKKGQY 60 PKPVLSKGWR AFVRNKKLKV GDKIKFSLNQ TAAATPFYRV RAEKEVKIFG AIFGYSPIIA 120 TFP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 78 | RKKGQYPKPVLSKGWRAFVRNKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.T054700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010223.1 | 1e-82 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | U7DW61 | 2e-84 | U7DW61_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0219s00200.1 | 4e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34310.1 | 1e-08 | auxin response factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.T054700.1 |
Entrez Gene | 18110043 |