PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T043800.1
Common NamePOPTR_0017s09750g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 187aa    MW: 21250.9 Da    PI: 10.1179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T043800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-32107165159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+
  Potri.T043800.1 107 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCTVKKQVQRLTKDEGVVVTTYEGMHSHP 165
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3392165IPR003657WRKY domain
SuperFamilySSF1182901.44E-2999166IPR003657WRKY domain
PROSITE profilePS5081129.941102167IPR003657WRKY domain
SMARTSM007745.1E-38107166IPR003657WRKY domain
PfamPF031062.6E-26108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEKFQILFPF ASTRSSDHPV SSSMTDNSHI LSDFKADSTS SGFSGSKKEN YHLVPRTSSE  60
INKDLNSQGA SFGIGSPTEL KAAKKKGEKK VRKPRYAFQT RSQVDILDDG YRWRKYGQKA  120
VKNNKFPRSY YRCTYQGCTV KKQVQRLTKD EGVVVTTYEG MHSHPIEKSN DNFEHILSQM  180
QIYTPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2897166776Probable WRKY transcription factor 4
2lex_A9e-2897166776Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T043800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373216.11e-139probable WRKY transcription factor 75
TrEMBLU5FIL51e-137U5FIL5_POPTR; Uncharacterized protein
STRINGPOPTR_0017s09750.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-59WRKY DNA-binding protein 75