PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G131300.1
Common NamePOPTR_0019s15190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 322aa    MW: 36450.9 Da    PI: 6.3853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G131300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19128176355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr+++ +g+W+AeIrdp+    r kr++lg+f taeeAa  +++a+ kl+g
  Potri.019G131300.1 128 FRGVRQRP-WGKWAAEIRDPT----RrKRVWLGTFNTAEEAATVYDRAAVKLKG 176
                         8*******.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-33126184No hitNo description
SMARTSM003809.2E-38127190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-31127185IPR001471AP2/ERF domain
PROSITE profilePS5103224.078127184IPR001471AP2/ERF domain
PRINTSPR003672.0E-10128139IPR001471AP2/ERF domain
PfamPF008474.2E-12128176IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22128185IPR016177DNA-binding domain
PRINTSPR003672.0E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLIYNPNTMS VQSKVKFTEH VFATKKLIKN QQQQHPSSRI RGQRLVRIIH TDPDATDSSS  60
DEGEEQEQER RFVRRVKRQV SEIRLLEQET TAPAAPSSRT SNDDHRDPTR KRPSSRLPVS  120
DVTRRKNFRG VRQRPWGKWA AEIRDPTRRK RVWLGTFNTA EEAATVYDRA AVKLKGPDAV  180
TNFPTKSVLT VRANVDGPSD FQCESCDSPS SSGVNVMPSP TSVLRYEELT PFDPVLTEKA  240
KVIDDHRESC ESPLRLSMTS PTSVLRYEEL TPFDSLAYGD VDAFGFKIDV PFGLPDLMFP  300
GKFVDEEEFV DLDDFLVEAI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21126186465ATERF1
3gcc_A3e-21126186465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G131300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325634.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLB9INK50.0B9INK5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s15190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-40cytokinin response factor 4