PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G123500.1
Common NamePOPTR_0019s14460g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 481aa    MW: 52890.7 Da    PI: 6.951
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G123500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31258315260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk +ers  +++v+ei+Y+g+Hnh+k
  Potri.019G123500.1 258 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKILERSL-EGQVTEIVYKGSHNHPK 315
                         7****************************************.***************85 PP
2WRKY84.41.1e-26432476145
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSST CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedp 45 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d 
  Potri.019G123500.1 432 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHVERASHDL 476
                         59***************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-27244316IPR003657WRKY domain
PROSITE profilePS5081122.332252316IPR003657WRKY domain
SuperFamilySSF1182903.66E-24252316IPR003657WRKY domain
SMARTSM007747.5E-34257315IPR003657WRKY domain
PfamPF031065.7E-24258314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-29417477IPR003657WRKY domain
SuperFamilySSF1182904.45E-23424476IPR003657WRKY domain
PROSITE profilePS5081128.495427475IPR003657WRKY domain
SMARTSM007741.1E-23432476IPR003657WRKY domain
PfamPF031062.2E-20433474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MASSPGSLDT SANSHSEGSS NYFSFNTYSS SHYPFMTSSS LTDLLASSDE EPNNHITNNS  60
KLSDRIAERT GSGVPKFKSI PPPSLPLSPP PVSPSSYFAI PAGLSPAELL DSPVLLNPSN  120
ILPSPTTGTF PAQAFNWKSS YGNSLQNVKK EDKTFSDFSF QQPARPPTTS TAMFQSSNAT  180
IQPEQQQTWG FQESAKQGAF VSGKSSMVKM EYNSNSMQSF SPEIAAIQTN PQSNNGFQSD  240
YGNQQQQYQS VREQRRSEDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT KKILERSLEG  300
QVTEIVYKGS HNHPKPQSTR RSSSSTTASN LGMIPAPNSN PNEIQEQSYV THGSGQMDSS  360
VATPENSSIS IGDDDFDSQR SRSGGGDDFD EDEPEAKRWK REGDNEGISA PGSKAVREPR  420
VVVQTTSDID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTY QGCPVRKHVE RASHDLTLGQ  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-25249475877Probable WRKY transcription factor 4
2lex_A7e-25249475877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G123500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774240.0GQ377424.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002326093.30.0LOW QUALITY PROTEIN: WRKY transcription factor WRKY24
SwissprotQ6B6R41e-121WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2K1WT450.0A0A2K1WT45_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-79WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]