PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G099900.5 | ||||||||
Common Name | POPTR_0019s13140g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 39508.1 Da PI: 5.0462 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.4 | 6.8e-24 | 12 | 130 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkev 92 +G rF+P+deel +yL +k+ g+++ + + i+ +d+y+++P+dLp ++++ e +fFs+ ++k t + r nr+t +g W atgk+ e+ Potri.019G099900.5 12 VGDRFNPNDEELTYHYLMQKLLGNDHLV-SRIPLLDLYQFDPSDLP---YSNDGEGHFFSPLHTKLGTnNGRINRSTGAGSWLATGKHCEI 98 799**********************877.77***************...4567899****99999875378******************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ ++ + g++k+ v++k +g + vmhey++ Potri.019G099900.5 99 TSQhnGEVNSGIRKIYVYFK----DG--IKYVMHEYSI 130 **96666679*********3....33..568*****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-29 | 7 | 145 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.879 | 10 | 145 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-13 | 12 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MTRMTTPFEF NVGDRFNPND EELTYHYLMQ KLLGNDHLVS RIPLLDLYQF DPSDLPYSND 60 GEGHFFSPLH TKLGTNNGRI NRSTGAGSWL ATGKHCEITS QHNGEVNSGI RKIYVYFKDG 120 IKYVMHEYSI PNLSTSLVLC KVMKKMPSKK SGGTCKKVKK RKEAAELPLP ICNEDNSTLA 180 SGVMKKKMSV KKSEGPSKKV KRTDEKADMP YNKENITPVP DEGSDLENWI TSDKSDFSTY 240 NNIIDNKGEV GDQQTEKSTC DNGGTPASAY PVADFTTLED QVDPEILPHL QSFLGYDQLD 300 YSRYDFTQVD PPLTEQVSTN NGPAGTSMFD PEEDQFNEPE TFWKYLLSNT L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-17 | 13 | 150 | 23 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 161 | KKVKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G099900.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU285968 | 1e-67 | GU285968.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446850.1 | 0.0 | NAC domain-containing protein 96 isoform X2 | ||||
TrEMBL | A0A2K1WS74 | 0.0 | A0A2K1WS74_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s13140.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-23 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G099900.5 |
Entrez Gene | 18108554 |