PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G099900.2
Common NamePOPTR_0019s13140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 352aa    MW: 39508.1 Da    PI: 5.0462
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G099900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.46.8e-24121303128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkev 92 
                         +G rF+P+deel  +yL +k+ g+++ + + i+ +d+y+++P+dLp   ++++ e +fFs+ ++k  t + r nr+t +g W atgk+ e+
  Potri.019G099900.2  12 VGDRFNPNDEELTYHYLMQKLLGNDHLV-SRIPLLDLYQFDPSDLP---YSNDGEGHFFSPLHTKLGTnNGRINRSTGAGSWLATGKHCEI 98 
                         799**********************877.77***************...4567899****99999875378******************** PP

                 NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s+  ++ + g++k+ v++k    +g   + vmhey++
  Potri.019G099900.2  99 TSQhnGEVNSGIRKIYVYFK----DG--IKYVMHEYSI 130
                         **96666679*********3....33..568*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-297145IPR003441NAC domain
PROSITE profilePS5100527.87910145IPR003441NAC domain
PfamPF023651.6E-1312130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTRMTTPFEF NVGDRFNPND EELTYHYLMQ KLLGNDHLVS RIPLLDLYQF DPSDLPYSND  60
GEGHFFSPLH TKLGTNNGRI NRSTGAGSWL ATGKHCEITS QHNGEVNSGI RKIYVYFKDG  120
IKYVMHEYSI PNLSTSLVLC KVMKKMPSKK SGGTCKKVKK RKEAAELPLP ICNEDNSTLA  180
SGVMKKKMSV KKSEGPSKKV KRTDEKADMP YNKENITPVP DEGSDLENWI TSDKSDFSTY  240
NNIIDNKGEV GDQQTEKSTC DNGGTPASAY PVADFTTLED QVDPEILPHL QSFLGYDQLD  300
YSRYDFTQVD PPLTEQVSTN NGPAGTSMFD PEEDQFNEPE TFWKYLLSNT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-171315023173NAC domain-containing protein 19
3swm_B6e-171315023173NAC domain-containing protein 19
3swm_C6e-171315023173NAC domain-containing protein 19
3swm_D6e-171315023173NAC domain-containing protein 19
3swp_A6e-171315023173NAC domain-containing protein 19
3swp_B6e-171315023173NAC domain-containing protein 19
3swp_C6e-171315023173NAC domain-containing protein 19
3swp_D6e-171315023173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161KKVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G099900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2859681e-67GU285968.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446850.10.0NAC domain-containing protein 96 isoform X2
TrEMBLA0A2K1WS740.0A0A2K1WS74_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13140.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-23NAC domain containing protein 71