PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G099900.1
Common NamePOPTR_0019s13140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 357aa    MW: 39999.6 Da    PI: 4.9573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G099900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.53e-24121353128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdk 90 
                         +G rF+P+deel  +yL +k+ g+++ + + i+ +d+y+++P+dLp    +++++ e +fFs+ ++k  t + r nr+t +g W atgk+ 
  Potri.019G099900.1  12 VGDRFNPNDEELTYHYLMQKLLGNDHLV-SRIPLLDLYQFDPSDLPyFaGTDSNDGEGHFFSPLHTKLGTnNGRINRSTGAGSWLATGKHC 101
                         799**********************877.77***************423444556689*****9999875378****************** PP

                 NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         e++s+  ++ + g++k+ v++k    +g   + vmhey++
  Potri.019G099900.1 102 EITSQhnGEVNSGIRKIYVYFK----DG--IKYVMHEYSI 135
                         ****96666679*********3....33..568*****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-307150IPR003441NAC domain
PROSITE profilePS5100528.20310150IPR003441NAC domain
PfamPF023651.9E-1312135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTRMTTPFEF NVGDRFNPND EELTYHYLMQ KLLGNDHLVS RIPLLDLYQF DPSDLPYFAG  60
TDSNDGEGHF FSPLHTKLGT NNGRINRSTG AGSWLATGKH CEITSQHNGE VNSGIRKIYV  120
YFKDGIKYVM HEYSIPNLST SLVLCKVMKK MPSKKSGGTC KKVKKRKEAA ELPLPICNED  180
NSTLASGVMK KKMSVKKSEG PSKKVKRTDE KADMPYNKEN ITPVPDEGSD LENWITSDKS  240
DFSTYNNIID NKGEVGDQQT EKSTCDNGGT PASAYPVADF TTLEDQVDPE ILPHLQSFLG  300
YDQLDYSRYD FTQVDPPLTE QVSTNNGPAG TSMFDPEEDQ FNEPETFWKY LLSNTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-161315523173NAC domain-containing protein 19
3swm_B2e-161315523173NAC domain-containing protein 19
3swm_C2e-161315523173NAC domain-containing protein 19
3swm_D2e-161315523173NAC domain-containing protein 19
3swp_A2e-161315523173NAC domain-containing protein 19
3swp_B2e-161315523173NAC domain-containing protein 19
3swp_C2e-161315523173NAC domain-containing protein 19
3swp_D2e-161315523173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166KKVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G099900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2859681e-67GU285968.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371558.20.0NAC domain-containing protein 96 isoform X1
RefseqXP_024446846.10.0NAC domain-containing protein 96 isoform X1
RefseqXP_024446847.10.0NAC domain-containing protein 96 isoform X1
RefseqXP_024446848.10.0NAC domain-containing protein 96 isoform X1
RefseqXP_024446849.10.0NAC domain-containing protein 96 isoform X1
TrEMBLA0A2K1WS780.0A0A2K1WS78_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3939422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-24NAC domain containing protein 71