PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G099800.2
Common NamePOPTR_0019s13130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 345aa    MW: 38689.5 Da    PI: 6.1347
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G099800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.11.1e-2581283128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdke 91 
                         +G rF+Pt eel++++L +k+ g+++ + + i+ +d+y+++PwdLp   ++++ e yfFs+ + ky+  ++ r nr+t++g W a+gkd e
  Potri.019G099800.2   8 VGDRFSPTKEELITHFLMQKLLGNDHLV-SRITLLDVYQSDPWDLP---YSDDGEGYFFSPLHPKYPgtNNGRINRSTRTGSWLAKGKDYE 94 
                         689**********************877.77***************...4578899**********976788******************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+ +ge++g+++++v     +++    + vmhe+++
  Potri.019G099800.2  95 ITSQhNGEVIGIRRIFVHS--CNKD--GIKYVMHEFSI 128
                         **9988999*******997..3334..4689****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-306142IPR003441NAC domain
PROSITE profilePS5100529.1216157IPR003441NAC domain
PfamPF023654.6E-148128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTPSEYNVGD RFSPTKEELI THFLMQKLLG NDHLVSRITL LDVYQSDPWD LPYSDDGEGY  60
FFSPLHPKYP GTNNGRINRS TRTGSWLAKG KDYEITSQHN GEVIGIRRIF VHSCNKDGIK  120
YVMHEFSIPN QNSLVLCKVM KKMPSKKSGG TCKKVKKRKE AAELPLPICN EDNSTLSSGL  180
MKKKMPDKKS AGPCKKVKSS EKKADHMPYN EENITPVPDE GFDFENWITS VMSDYNNIID  240
NKEQQTEKST FDNGGTNCLK TSSASVYHVA DSTTPEDHQG GPEILPHLQS FSGYDQQDLS  300
LHDFTLDDLP LMLPEQVNTS NGPAGTSMSV PKDDLYIWLE PLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-18914723173NAC domain-containing protein 19
3swm_B1e-18914723173NAC domain-containing protein 19
3swm_C1e-18914723173NAC domain-containing protein 19
3swm_D1e-18914723173NAC domain-containing protein 19
3swp_A1e-18914723173NAC domain-containing protein 19
3swp_B1e-18914723173NAC domain-containing protein 19
3swp_C1e-18914723173NAC domain-containing protein 19
3swp_D1e-18914723173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158KKVKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G099800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2859781e-121GU285978.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence.
GenBankGU2859791e-121GU285979.1 Populus balsamifera isolate FBK13 haplotype B unknown protein gene, partial sequence.
GenBankGU2859801e-121GU285980.1 Populus balsamifera isolate FRE01 haplotype A unknown protein gene, partial sequence.
GenBankGU2859811e-121GU285981.1 Populus balsamifera isolate FRE01 haplotype B unknown protein gene, partial sequence.
GenBankGU2859821e-121GU285982.1 Populus balsamifera isolate GIL14 haplotype A unknown protein gene, partial sequence.
GenBankGU2859831e-121GU285983.1 Populus balsamifera isolate GIL14 haplotype B unknown protein gene, partial sequence.
GenBankGU2859841e-121GU285984.1 Populus balsamifera isolate INU03 haplotype A unknown protein gene, partial sequence.
GenBankGU2859851e-121GU285985.1 Populus balsamifera isolate INU03 haplotype B unknown protein gene, partial sequence.
GenBankGU2859861e-121GU285986.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence.
GenBankGU2859871e-121GU285987.1 Populus balsamifera isolate KUU07 haplotype B unknown protein gene, partial sequence.
GenBankGU2859881e-121GU285988.1 Populus balsamifera isolate LOV02 haplotype A unknown protein gene, partial sequence.
GenBankGU2859891e-121GU285989.1 Populus balsamifera isolate LOV02 haplotype B unknown protein gene, partial sequence.
GenBankGU2859901e-121GU285990.1 Populus balsamifera isolate MGR10 haplotype A unknown protein gene, partial sequence.
GenBankGU2859911e-121GU285991.1 Populus balsamifera isolate MGR10 haplotype B unknown protein gene, partial sequence.
GenBankGU2859921e-121GU285992.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
GenBankGU2859931e-121GU285993.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBankGU2859941e-121GU285994.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBankGU2859951e-121GU285995.1 Populus balsamifera isolate POR11 haplotype B unknown protein gene, partial sequence.
GenBankGU2859961e-121GU285996.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence.
GenBankGU2859971e-121GU285997.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371555.10.0NAC domain-containing protein 91 isoform X4
TrEMBLA0A2K1WS640.0A0A2K1WS64_POPTR; Uncharacterized protein
STRINGPOPTR_0019s13130.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-24NAC domain containing protein 57