PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.019G092800.1

Common Name

POPTR_0019s12260g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

VOZ

Protein Properties

Length: 450aa MW: 50044 Da PI: 5.1354

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G092800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	451.5	9.2e-139	210	426	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaf+gpkcalwdctrpaqg+ew++dycssfhatlalneg+pg+tpvlrp+gi+lkd+llf+al+ak+qgk+vgip+cegaa +kspwn Potri.019G092800.1 210 PPPSAFMGPKCALWDCTRPAQGAEWCEDYCSSFHATLALNEGPPGMTPVLRPRGINLKDNLLFDALTAKMQGKNVGIPQCEGAAVMKSPWN 300 89*************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 aaelfdlsllegetirewlffdkprraf+sgnrkqrslpdysgrgwhesrkqvmke+gg+k+syymdpqp++++ewhlyeyein++da+al Potri.019G092800.1 301 AAELFDLSLLEGETIREWLFFDKPRRAFDSGNRKQRSLPDYSGRGWHESRKQVMKELGGKKKSYYMDPQPPGCHEWHLYEYEINNCDACAL 391 *************************************************************************************** PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrle+kl+d+kk++kgkvskdsl+dlqkk+grlta Potri.019G092800.1 392 YRLEFKLADGKKTPKGKVSKDSLVDLQKKMGRLTA 426 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MQKGGKSKCA STSHHLLMDN AKNRLNDLEE RFFNIQTARK EGRNNDVALL EEQVCQSLRE 60 WKAELDVPSP ANSLLDISLG SFSEDIGRLL QLYEEEDDAT SPLTMQSVLK PETQPEPNFQ 120 NLNLGNLTTF QDEYLVNSHS QELGFQGFHQ PNGSSGLQNV AVSDPDITTL LDCHQFTLDE 180 EFDPGHFVGT NDTKECGINS ESNNLQYISP PPSAFMGPKC ALWDCTRPAQ GAEWCEDYCS 240 SFHATLALNE GPPGMTPVLR PRGINLKDNL LFDALTAKMQ GKNVGIPQCE GAAVMKSPWN 300 AAELFDLSLL EGETIREWLF FDKPRRAFDS GNRKQRSLPD YSGRGWHESR KQVMKELGGK 360 KKSYYMDPQP PGCHEWHLYE YEINNCDACA LYRLEFKLAD GKKTPKGKVS KDSLVDLQKK 420 MGRLTAVVTA DNSPSDKGKT NTSGTGHGP*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MQKGGKSKCA STSHHLLMDN AKNRLNDLEE RFFNIQTARK EGRNNDVALL EEQVCQSLRE  60
WKAELDVPSP ANSLLDISLG SFSEDIGRLL QLYEEEDDAT SPLTMQSVLK PETQPEPNFQ  120
NLNLGNLTTF QDEYLVNSHS QELGFQGFHQ PNGSSGLQNV AVSDPDITTL LDCHQFTLDE  180
EFDPGHFVGT NDTKECGINS ESNNLQYISP PPSAFMGPKC ALWDCTRPAQ GAEWCEDYCS  240
SFHATLALNE GPPGMTPVLR PRGINLKDNL LFDALTAKMQ GKNVGIPQCE GAAVMKSPWN  300
AAELFDLSLL EGETIREWLF FDKPRRAFDS GNRKQRSLPD YSGRGWHESR KQVMKELGGK  360
KKSYYMDPQP PGCHEWHLYE YEINNCDACA LYRLEFKLAD GKKTPKGKVS KDSLVDLQKK  420
MGRLTAVVTA DNSPSDKGKT NTSGTGHGP*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G092800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213156	0.0	AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002326034.1	0.0	transcription factor VOZ1
Refseq	XP_024447611.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-174	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	B9IQS1	0.0	B9IQS1_POPTR; VOZ family protein
STRING	POPTR_0019s12260.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94
Representative plant	OGRP2327	13	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-177	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Potri.019G092800.1
Entrez Gene	7494611

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]