PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G088000.1 | ||||||||
Common Name | POPTR_0019s11780g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 14686.5 Da PI: 8.8077 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 20 | 63 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 s+y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ Potri.019G088000.1 20 SRYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDL 63 7899******.**********865...5******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.94E-18 | 20 | 79 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.13E-24 | 20 | 78 | No hit | No description |
Pfam | PF00847 | 2.1E-9 | 20 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-25 | 21 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-25 | 21 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.442 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-9 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-9 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MENFPPLLYR NPKRSSRQSS RYLGVRRRPW GRYAAEIRNP YTKERHWLGT FDTAEEAAVA 60 YDLSSISFSG IERARTNFYY PFFAHPSPSQ EAPPPPLPPP EMEKGDQLGM EDVDGNNALE 120 ILLKAGNGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 18 | 70 | 11 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G088000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446878.1 | 7e-80 | ethylene-responsive transcription factor LEP | ||||
Swissprot | Q3E703 | 2e-28 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | A0A3N7I8W0 | 2e-78 | A0A3N7I8W0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s11780.1 | 1e-90 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14513 | 13 | 17 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 4e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G088000.1 |
Entrez Gene | 7494588 |