 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Potri.019G085600.1 |
| Common Name | POPTR_0019s11540g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
GRAS |
| Protein Properties |
Length: 464aa MW: 52729.2 Da PI: 7.0887 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.019G085600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 312.5 | 9.4e-96 | 82 | 460 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
l++lLl +A+a+++++ a + L++l + +s +gd++qR++ayf+ +Laarl+++ s y+ + ++t +ee+ a++ ++ vsP++
Potri.019G085600.1 82 LIHLLLIAATALDENNVGSALENLTELYQSVSLSGDSVQRVVAYFADGLAARLLGKKSPFYDMIMKEPT----CEEEFLAFTDLYRVSPYY 168
689**********************************************************98887777....5788899999******** PP
GRAS 92 kfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gv 174
+f+h+taNqaIlea e+e + +H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ + eel+et++rL +fA+ + ++
Potri.019G085600.1 169 QFAHFTANQAILEAYEKEeennnSSLHVIDFDVSYGFQWPSLIQSLSEKAssGNRISLRITGFGR----RIEELQETESRLLSFAKGFrNL 255
****************9977777789**********************99745556*********....9****************9758* PP
GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
fef+ l l +l +Lr k++E++aVnlv++l +l +s+++++ +Lk v sl+P +vv+veqe +++ sFl rf+e+l+y++
Potri.019G085600.1 256 VFEFQGL----LRGSKLFNLRKKKNETVAVNLVFHLNTLN-DSLKISD----TLKSVHSLNPSIVVLVEQEGSRSPRSFLSRFMESLHYFA 337
******8....7777789******************9995.8888888....*************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr......kvksdg. 348
a+fdsl+ lp es+er ++E+ lg++i+ ++ c +++ r ++e+W+ r+e GF ++ls+k qaklll+ ++dg
Potri.019G085600.1 338 AMFDSLDDCLPLESSERLSIEKNHLGKDIKRMLNCDKDDaNCPRYDKMETWKGRMEGHGFAGIKLSSKSLIQAKLLLKirthycPLQFDGd 428
************************************9996789*********************************983322211123434 PP
GRAS 349 ....yrveee.sgslv.lgWkdrpLvsvSaWr 374
++v e+ +g + lgW+dr L+++SaWr
Potri.019G085600.1 429 fcggFKVFERdDGKGIsLGWQDRYLITASAWR 460
44447776543666667**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 464 aa
Download sequence Send
to blast |
MEGMEDQEEL LNLSLAIVTD SNGDMKRKRK RSRADVSNPL MNTYEGRSEG KIFRLLQMRE 60
QMLKLDHKRK GAVEENGKGL HLIHLLLIAA TALDENNVGS ALENLTELYQ SVSLSGDSVQ 120
RVVAYFADGL AARLLGKKSP FYDMIMKEPT CEEEFLAFTD LYRVSPYYQF AHFTANQAIL 180
EAYEKEEENN NSSLHVIDFD VSYGFQWPSL IQSLSEKASS GNRISLRITG FGRRIEELQE 240
TESRLLSFAK GFRNLVFEFQ GLLRGSKLFN LRKKKNETVA VNLVFHLNTL NDSLKISDTL 300
KSVHSLNPSI VVLVEQEGSR SPRSFLSRFM ESLHYFAAMF DSLDDCLPLE SSERLSIEKN 360
HLGKDIKRML NCDKDDANCP RYDKMETWKG RMEGHGFAGI KLSSKSLIQA KLLLKIRTHY 420
CPLQFDGDFC GGFKVFERDD GKGISLGWQD RYLITASAWR ICA*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213423 | 0.0 | AC213423.1 Populus trichocarpa clone POP042-P09, complete sequence. |
