PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G081800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 418aa MW: 44584.3 Da PI: 7.0355 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.6 | 2.6e-39 | 92 | 204 | 5 | 101 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt++++a+++ ++s +ss+++ s++ Potri.019G081800.1 92 KRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTGTIPANFStLNVSLRSSGATISAPasksap 182 899***************************************************************9998777777777744443444445 PP TCP 89 ...............kaaksaakskksq 101 + +++++ Potri.019G081800.1 183 lsfhsglafydandaS------ETRRAM 204 5555555553333220......222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-37 | 95 | 229 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.667 | 95 | 149 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MELMESQRNT RNQQRNIGAD EDRHGQKEES VAASLQLVVP LGSQSSQLQQ QHGSTSTTTT 60 SQGPFMGSIS SQIGVHPSTS TSNSTITKST IKRPSKDRHT KVDGRGRRIR MPAMCAARVF 120 QLTRELGHKS DGETIEWLLQ QAEPSIIATT GTGTIPANFS TLNVSLRSSG ATISAPASKS 180 APLSFHSGLA FYDANDASET RRAMASNPHM LGFHHQLYPQ NLVSDDNYMR KTFREDLFKE 240 TTQQQSTETI EASNSAKSRT GVQDQETAGS FRPATNILPT PMWAVGPAAT TNGGNTFWML 300 PVGGGATQAA AVTEPQMWTF PTAGAAAGVT SMQRVNFGGS GRVSNPVQLG SMIVQQQVGA 360 NQQLGLGLSE SNMGMIFGGV NAYSSSRVGL GMDLEQNNQE KQPQGSDSGD ENPNDSQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G081800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215626 | 0.0 | AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024446643.1 | 0.0 | transcription factor TCP23 | ||||
TrEMBL | A0A2I4KKM3 | 0.0 | A0A2I4KKM3_POPTR; TCP family protein | ||||
STRING | POPTR_0013s11510.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 | Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72010.1 | 6e-69 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G081800.1 |