PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G081800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 418aa    MW: 44584.3 Da    PI: 7.0355
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G081800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.6e-39922045101
                 TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                         k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+p+i++ tgt++++a+++  ++s +ss+++ s++      
  Potri.019G081800.1  92 KRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIATTGTGTIPANFStLNVSLRSSGATISAPasksap 182
                         899***************************************************************9998777777777744443444445 PP

                 TCP  89 ...............kaaksaakskksq 101
                                        +      +++++ 
  Potri.019G081800.1 183 lsfhsglafydandaS------ETRRAM 204
                         5555555553333220......222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3795229IPR005333Transcription factor, TCP
PROSITE profilePS5136927.66795149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MELMESQRNT RNQQRNIGAD EDRHGQKEES VAASLQLVVP LGSQSSQLQQ QHGSTSTTTT  60
SQGPFMGSIS SQIGVHPSTS TSNSTITKST IKRPSKDRHT KVDGRGRRIR MPAMCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPSIIATT GTGTIPANFS TLNVSLRSSG ATISAPASKS  180
APLSFHSGLA FYDANDASET RRAMASNPHM LGFHHQLYPQ NLVSDDNYMR KTFREDLFKE  240
TTQQQSTETI EASNSAKSRT GVQDQETAGS FRPATNILPT PMWAVGPAAT TNGGNTFWML  300
PVGGGATQAA AVTEPQMWTF PTAGAAAGVT SMQRVNFGGS GRVSNPVQLG SMIVQQQVGA  360
NQQLGLGLSE SNMGMIFGGV NAYSSSRVGL GMDLEQNNQE KQPQGSDSGD ENPNDSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G081800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156260.0AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446643.10.0transcription factor TCP23
TrEMBLA0A2I4KKM30.0A0A2I4KKM3_POPTR; TCP family protein
STRINGPOPTR_0013s11510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.16e-69TCP family protein