PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G075600.1
Common NamePOPTR_0019s10430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 186aa    MW: 20540.4 Da    PI: 4.7794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G075600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.7e-191565155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++k +g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++ a++ l+g
  Potri.019G075600.1 15 PRYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYEIPEMAAAAYDVAALHLRG 65
                        68*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-131565IPR001471AP2/ERF domain
CDDcd000181.51E-211574No hitNo description
SMARTSM003803.6E-341679IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-211674IPR016177DNA-binding domain
PROSITE profilePS5103222.9721673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-311674IPR001471AP2/ERF domain
PRINTSPR003676.9E-131728IPR001471AP2/ERF domain
PRINTSPR003676.9E-135575IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEGRIRDGHL GISPPRYRGV RQRKWGKWVS EIREPGKKTR IWLGSYEIPE MAAAAYDVAA  60
LHLRGRGAQL NFPEMVDILP QPASSSAEDV QMAAQEAALM FRRPMKCSEA VSGDSSVGGG  120
LGPVRVGLSP SQIQAINEAP LDSPKMWMEL AGALLLEEPM IMSDDIDVAY RDEWGEMQHD  180
SIWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161777667ATERF1
3gcc_A1e-161777667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G075600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325520.21e-132ethylene-responsive transcription factor ERF022
SwissprotQ9LQ281e-53ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLB9IQB71e-131B9IQB7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10430.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-47ERF family protein