PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G073600.1 | ||||||||
Common Name | POPTR_0019s10225g, POPTR_0019s10260g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 70aa MW: 8351.57 Da PI: 11.2142 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 45.6 | 1.9e-14 | 2 | 36 | 44 | 78 |
TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 44 qqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 q rf elsefD++krsCrrrL+ hn+rrrk+q+ Potri.019G073600.1 2 QNLFRFRELSEFDDKKRSCRRRLSYHNARRRKPQP 36 55679***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 13.537 | 1 | 34 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.4E-4 | 2 | 21 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.7E-8 | 4 | 33 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.53E-11 | 5 | 40 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MQNLFRFREL SEFDDKKRSC RRRLSYHNAR RRKPQPEAIW FSSARPSSSF YGACFNFKGF 60 NCRVPKIID* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 15 | 32 | KKRSCRRRLSYHNARRRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G073600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213088 | 1e-114 | AC213088.1 Populus trichocarpa clone POP086-B14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014592.1 | 5e-18 | PREDICTED: squamosa promoter-binding-like protein 12 isoform X3 | ||||
Refseq | XP_011017580.1 | 5e-18 | PREDICTED: squamosa promoter-binding-like protein 12 isoform X3 | ||||
Refseq | XP_024446071.1 | 5e-18 | squamosa promoter-binding-like protein 12 isoform X3 | ||||
Swissprot | A2YGR5 | 4e-15 | SPL12_ORYSI; Squamosa promoter-binding-like protein 12 | ||||
Swissprot | Q5Z818 | 5e-15 | SPL12_ORYSJ; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | B9IQA5 | 5e-43 | B9IQA5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s10260.1 | 8e-44 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57920.1 | 2e-13 | squamosa promoter binding protein-like 15 |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G073600.1 |
Entrez Gene | 18108448 | 7455256 |
Publications ? help Back to Top | |||
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