PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G067400.1
Common NamePOPTR_0019s09530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 194aa    MW: 21276.9 Da    PI: 6.5375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G067400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-163684355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++GVr ++ +gr+v+eIr p   gk++r++lg+fg++e+Aa+a++ a+  l+g
  Potri.019G067400.1 36 FHGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFGSPEMAARAHDSAAFFLKG 84
                        79***888.**********8...557***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5063592IPR001471AP2/ERF domain
SMARTSM003809.0E-293598IPR001471AP2/ERF domain
PfamPF008471.8E-103684IPR001471AP2/ERF domain
CDDcd000183.59E-273694No hitNo description
Gene3DG3DSA:3.30.730.101.2E-273694IPR001471AP2/ERF domain
PRINTSPR003672.7E-73647IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-183694IPR016177DNA-binding domain
PRINTSPR003672.7E-75874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSITQEPPGL KTNPLESEPT SERKSKKRTR QRDAPFHGVR KRSWGRYVSE IRLPGKKTRV  60
WLGSFGSPEM AARAHDSAAF FLKGNSACLN FPDSVGSLPR PKSCSSKDIQ LAAAKAATGF  120
DETRVGNVVG FEDCESGGEP DSSIWLGLGE IETVSYEEVK RTPLLSPLRF DSVSGNDEVL  180
YMNDEELLFA TYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-143697668ATERF1
3gcc_A5e-143697668ATERF1
5wx9_A9e-1436921572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12541KKRTRQRDAPFHGVRKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G067400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559350.0EF155935.1 Populus trichocarpa TINY-like protein (TINYL16) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006388007.21e-141ethylene-responsive transcription factor ERF023
SwissprotQ391274e-33TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A2K1WQR61e-140A0A2K1WQR6_POPTR; Uncharacterized protein
STRINGPOPTR_0409s00200.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]