PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G066000.1
Common NamePOPTR_0019s09400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 369aa    MW: 41904.1 Da    PI: 7.8527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G066000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52101391129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++  k+ +  ++ewy F+++d+ky+tg+r+nrat++g+Wkatg+
  Potri.019G066000.1  10 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcKIGSaPQNEWYLFCHKDRKYPTGSRTNRATNAGFWKATGR 99 
                         69****************************.99**************962433333556******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk + + + +++g++ktLvfy grap+g+ktdW+mheyrle
  Potri.019G066000.1 100 DKCIRN-SYKKIGMRKTLVFYGGRAPHGQKTDWIMHEYRLE 139
                         *****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-595161IPR003441NAC domain
PROSITE profilePS5100556.50610161IPR003441NAC domain
PfamPF023652.5E-2711138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVMATSSGGV PPGFRFHPTD EELLHYYLKK KVSFQKFDME VIREVDLNKM EPWELQERCK  60
IGSAPQNEWY LFCHKDRKYP TGSRTNRATN AGFWKATGRD KCIRNSYKKI GMRKTLVFYG  120
GRAPHGQKTD WIMHEYRLED GDDAQGNLGE DGWVVCRVFK KKNLFKVSGE GGTTSMNSSD  180
QQLHSSSTNQ SRTFMHRDSQ YSLRQNHNHG NIQQPFVLSK AELELHYPHM AAPHQYSLFQ  240
SQTLMPPNKS LGYDHYSGLP KEPPVMVKQL MSGARDCESG SESLRYHACE PGLEVCTCEA  300
PQQMVAGRED HQGLNEWAML DRIVTSHLGN EDSAKGVRFD DASNAPSAHA INQLPLRGEM  360
MDFWGYGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-511016317167NO APICAL MERISTEM PROTEIN
1ut4_B4e-511016317167NO APICAL MERISTEM PROTEIN
1ut7_A4e-511016317167NO APICAL MERISTEM PROTEIN
1ut7_B4e-511016317167NO APICAL MERISTEM PROTEIN
3swm_A5e-511016320170NAC domain-containing protein 19
3swm_B5e-511016320170NAC domain-containing protein 19
3swm_C5e-511016320170NAC domain-containing protein 19
3swm_D5e-511016320170NAC domain-containing protein 19
3swp_A5e-511016320170NAC domain-containing protein 19
3swp_B5e-511016320170NAC domain-containing protein 19
3swp_C5e-511016320170NAC domain-containing protein 19
3swp_D5e-511016320170NAC domain-containing protein 19
4dul_A4e-511016317167NAC domain-containing protein 19
4dul_B4e-511016317167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G066000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371357.10.0protein BEARSKIN2
SwissprotQ9SV871e-159BRN2_ARATH; Protein BEARSKIN2
TrEMBLB9N1Q00.0B9N1Q0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s09400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-161NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]