PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G053900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 517aa    MW: 57152 Da    PI: 6.0376
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G053900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.6e-26137188254
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 
                         dDgynWrKYG+K +kgse+prsYY+C +++C vkkk+e+++ d++++ei+Y++
  Potri.019G053900.1 137 DDGYNWRKYGKKLIKGSEHPRSYYKCNHENCLVKKKIECAH-DGQITEIIYKE 188
                         8***************************************9.*********96 PP

2WRKY99.12.8e-31328386159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver +++ k v++tYeg+H+h+
  Potri.019G053900.1 328 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCSVRKHVERGSRNLKHVITTYEGKHDHK 386
                         59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-22132188IPR003657WRKY domain
SuperFamilySSF1182903.4E-20135187IPR003657WRKY domain
SMARTSM007741.4E-24136188IPR003657WRKY domain
PROSITE profilePS5081118.269137174IPR003657WRKY domain
PfamPF031063.7E-20137187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-34313386IPR003657WRKY domain
SuperFamilySSF1182901.15E-26321386IPR003657WRKY domain
PROSITE profilePS5081134.486323388IPR003657WRKY domain
SMARTSM007745.2E-34328387IPR003657WRKY domain
PfamPF031061.8E-23329386IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGGYGDGDRG SSNSSGLSFR FKPYGYGDAL PGFCTSGNQG NDFDFEANIL LDPAMDFQFP  60
VEFSEEATPE KCTSGSRTDV NVLDSMIANA TCSSDSPSNP IYVQSETIHE ENIESHHHLL  120
EEQKGTLPAT AIGRTSDDGY NWRKYGKKLI KGSEHPRSYY KCNHENCLVK KKIECAHDGQ  180
ITEIIYKEMG EGGNSVKVKG GSVQKNRESG SKDIKVHDGK VDGLERTSST SVVTEFSDSL  240
SAAQVKSVGT SESTETPELS STLASHDDDD DGVTQGSSFS VDVDDEFDLQ FSPHFRKIES  300
SLVETNMASR LVREPRVVVQ VESEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTSPGCS  360
VRKHVERGSR NLKHVITTYE GKHDHKPALA LARNTKAQVQ EFAPSFDRKP VFNNDYLRSK  420
YFPGNFSNEM NLWSSSIYSV KFPPIQNVMP YDSFGFNNHH LAGNHSGSVA PPVPDFPRSL  480
SPCLQTAANL SLARDDCRSH GKPDDQAQTF LQGQQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-32319385874Probable WRKY transcription factor 4
2lex_A6e-32319385874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G053900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438829.10.0WRKY transcription factor WRKY24
SwissprotQ9FG773e-65WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2K1Y3350.0A0A2K1Y335_POPTR; Uncharacterized protein
STRINGPOPTR_0019s08110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.14e-61WRKY family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]