PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.019G053900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 517aa MW: 57152 Da PI: 6.0376 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.9 | 1.6e-26 | 137 | 188 | 2 | 54 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 dDgynWrKYG+K +kgse+prsYY+C +++C vkkk+e+++ d++++ei+Y++ Potri.019G053900.1 137 DDGYNWRKYGKKLIKGSEHPRSYYKCNHENCLVKKKIECAH-DGQITEIIYKE 188 8***************************************9.*********96 PP | |||||||
2 | WRKY | 99.1 | 2.8e-31 | 328 | 386 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver +++ k v++tYeg+H+h+ Potri.019G053900.1 328 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCSVRKHVERGSRNLKHVITTYEGKHDHK 386 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-22 | 132 | 188 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-20 | 135 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-24 | 136 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.269 | 137 | 174 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-20 | 137 | 187 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-34 | 313 | 386 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-26 | 321 | 386 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.486 | 323 | 388 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-34 | 328 | 387 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-23 | 329 | 386 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MGGYGDGDRG SSNSSGLSFR FKPYGYGDAL PGFCTSGNQG NDFDFEANIL LDPAMDFQFP 60 VEFSEEATPE KCTSGSRTDV NVLDSMIANA TCSSDSPSNP IYVQSETIHE ENIESHHHLL 120 EEQKGTLPAT AIGRTSDDGY NWRKYGKKLI KGSEHPRSYY KCNHENCLVK KKIECAHDGQ 180 ITEIIYKEMG EGGNSVKVKG GSVQKNRESG SKDIKVHDGK VDGLERTSST SVVTEFSDSL 240 SAAQVKSVGT SESTETPELS STLASHDDDD DGVTQGSSFS VDVDDEFDLQ FSPHFRKIES 300 SLVETNMASR LVREPRVVVQ VESEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTSPGCS 360 VRKHVERGSR NLKHVITTYE GKHDHKPALA LARNTKAQVQ EFAPSFDRKP VFNNDYLRSK 420 YFPGNFSNEM NLWSSSIYSV KFPPIQNVMP YDSFGFNNHH LAGNHSGSVA PPVPDFPRSL 480 SPCLQTAANL SLARDDCRSH GKPDDQAQTF LQGQQW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-32 | 319 | 385 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 6e-32 | 319 | 385 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.019G053900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438829.1 | 0.0 | WRKY transcription factor WRKY24 | ||||
Swissprot | Q9FG77 | 3e-65 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A2K1Y335 | 0.0 | A0A2K1Y335_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s08110.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8349 | 34 | 45 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 4e-61 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.019G053900.1 |
Publications ? help Back to Top | |||
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