PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G050900.1
Common NamePOPTR_0019s07760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 302aa    MW: 33730.9 Da    PI: 6.6001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G050900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-191562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+d+++++G g+W++ +   g++R++k+c++rw +yl
  Potri.019G050900.1 15 KGPWTPEEDQKLIDYIQKHGHGSWRALPMLAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding56.85.2e-1868113148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE+++++d ++ lG++ W++Ia++++ gRt++++k++w+++l
  Potri.019G050900.1  68 RGNFSEEEQQIIIDFHQVLGNK-WSAIAQHLP-GRTDNEIKNFWNTHL 113
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3231062IPR017930Myb domain
SuperFamilySSF466893.74E-3213109IPR009057Homeodomain-like
SMARTSM007179.1E-161464IPR001005SANT/Myb domain
PfamPF002491.1E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-251669IPR009057Homeodomain-like
CDDcd001671.34E-121762No hitNo description
PROSITE profilePS5129426.59663117IPR017930Myb domain
SMARTSM007177.3E-1767115IPR001005SANT/Myb domain
PfamPF002492.1E-1668113IPR001005SANT/Myb domain
CDDcd001676.89E-1370113No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2870117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMAESPFQDE SALKKGPWTP EEDQKLIDYI QKHGHGSWRA LPMLAGLNRC GKSCRLRWTN  60
YLRPDIKRGN FSEEEQQIII DFHQVLGNKW SAIAQHLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNIIANLP QLLAAAANFS NLMNIPWDNA IKAQVDATKL QLLHNILQVL  180
GNKGLLKCGE DGLSSQGINA QAQSNFPNID APQQPFSDHN PIKDSKSRTH NSDQLVSSYA  240
FPTSNTLPQL VSASPECSSA NTINPNDIIS NPSNATSTTF EAWRNLMDDG ANDNYWIDII  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32131175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G050900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131600.0AC213160.1 Populus trichocarpa clone POP105-D13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447042.10.0transcription factor MYB53
SwissprotQ9SBF32e-82MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A3N7I0810.0A0A3N7I081_POPTR; Uncharacterized protein
STRINGPOPTR_0019s07760.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.19e-91myb domain protein 107
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]