PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G036100.1
Common NamePOPTR_0019s05170g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 276aa    MW: 30886.6 Da    PI: 5.2272
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G036100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-173584255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+  ++   + r +lg+f taeeAa+a+++a+  l+g
  Potri.019G036100.1 35 KFVGVRQRP-SGRWVAEIKYTTQ---NIRMWLGTFETAEEAARAYDEAACLLRG 84
                        799******.7******888332...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.95E-303591No hitNo description
SuperFamilySSF541711.57E-183592IPR016177DNA-binding domain
PROSITE profilePS5103219.1773592IPR001471AP2/ERF domain
PfamPF008479.4E-133584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-263591IPR001471AP2/ERF domain
SMARTSM003804.5E-333598IPR001471AP2/ERF domain
PRINTSPR003679.3E-83647IPR001471AP2/ERF domain
PRINTSPR003679.3E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEIHFQQEKK RRKASMPVSK TSKFKGISRP SSSNKFVGVR QRPSGRWVAE IKYTTQNIRM  60
WLGTFETAEE AARAYDEAAC LLRGSNTRTN FITRVSLDSP LASRIRNLLN NKRRDKQQQS  120
EEETAEVSTP PTSTIITTSA ITTSCCSSCS SISSCGMSTD SYSNSSSVHE TDILFDDAYK  180
PDLSNLIEEF KWVTSQSDLS WGFGPVFDGF AFSQEVLDFP KSVVSPGTSD LEFSEFDKMK  240
VERQISASLY AMNGVQEYME TIHDPIEALW DLPPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1812KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G036100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325844.20.0ethylene-responsive transcription factor RAP2-11
SwissprotA0A1X9PY881e-103ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLB9IPR20.0B9IPR2_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-25related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]