PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G033000.1
Common NamePOPTR_0019s04860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 295aa    MW: 32198.7 Da    PI: 6.6119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G033000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17223257135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C +  Tp+WR gp+g+ktLCnaCG++y++ +l
  Potri.019G033000.1 223 CTHCLAQRTPQWRAGPSGPKTLCNACGVRYKSGRL 257
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-15217271IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.004217253IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15218281No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14221255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-11222269No hitNo description
PfamPF003202.7E-15223257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDFCRNVTVS GEYHHQQEHV LASPPPCSTL TAAAASNSPL DDLFSAQNTE VDFSMEWLSV  60
FVEDCLSSTG NCLPAPTSDA QKTNTEENPP KPLQQKPQDQ ENPSSLKKLA VPGKARSKRR  120
RTAGDRSRNP LTSWCYTNQA FNLACSDPPL LQQTHWLADS ELITPIKDGS DNRGTDGEVQ  180
EKSGAEGDVE EDLGKVLEVG SSSSKDSTGS LESDNGQQQP RRCTHCLAQR TPQWRAGPSG  240
PKTLCNACGV RYKSGRLLPE YRPAKSPTFV SYLHSNSHKK VMEMRMANSA VFNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.90280.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G033000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325826.30.0GATA transcription factor 2
TrEMBLA0A2K1WNU60.0A0A2K1WNU6_POPTR; Uncharacterized protein
STRINGPOPTR_0019s04860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.16e-36GATA transcription factor 9