PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.019G031600.1

Common Name

POPTR_0019s04710g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 397aa MW: 44930.1 Da PI: 6.6782

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G031600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.1	3.3e-57	18	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdee++++yL++kv ++++ + ++i evd++kvePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke Potri.019G031600.1 18 LPPGFRFHPTDEEIITHYLTEKVMNSSFCA-SAIGEVDLNKVEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKE 107 79***********************988.88***********99999********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ k++lvg+kktLvfykgrapkgek++Wvmheyrle Potri.019G031600.1 108 IYKGKHSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 145 9999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-64	14	169	IPR003441	NAC domain
PROSITE profile	PS51005	60.359	18	169	IPR003441	NAC domain
Pfam	PF02365	5.4E-30	19	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MTMEEAIVVN KGDDLIDLPP GFRFHPTDEE IITHYLTEKV MNSSFCASAI GEVDLNKVEP 60 WDLPKKAKMG EKEWYFFCQR DRKYPTGMRT NRATESGYWK ATGKDKEIYK GKHSLVGMKK 120 TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY YSLPKVARDE WVVCRIFHKS TGIKKTSIHD 180 LLRVNSFGDD FLDYSSLPPF MDPLNYNSRP STSSFSGGDN NEFKEMATRS SDGNYFSNTS 240 MLNNNQNFAQ PPNTNYQAPN SSFHPQIPAS NPLYTFQTSP NMPGYLHQGK SSSNSFQNFQ 300 NSIFSDNEHT LLRSLARNSY REASGLEKQC KVERFSSNQS MVSLSQDTGL STDVNTTAEI 360 SSVVSKQEIG SHDKVFEDLE GPSAGPIADL DCLWDY*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MTMEEAIVVN KGDDLIDLPP GFRFHPTDEE IITHYLTEKV MNSSFCASAI GEVDLNKVEP  60
WDLPKKAKMG EKEWYFFCQR DRKYPTGMRT NRATESGYWK ATGKDKEIYK GKHSLVGMKK  120
TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY YSLPKVARDE WVVCRIFHKS TGIKKTSIHD  180
LLRVNSFGDD FLDYSSLPPF MDPLNYNSRP STSSFSGGDN NEFKEMATRS SDGNYFSNTS  240
MLNNNQNFAQ PPNTNYQAPN SSFHPQIPAS NPLYTFQTSP NMPGYLHQGK SSSNSFQNFQ  300
NSIFSDNEHT LLRSLARNSY REASGLEKQC KVERFSSNQS MVSLSQDTGL STDVNTTAEI  360
SSVVSKQEIG SHDKVFEDLE GPSAGPIADL DCLWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	16	175	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	16	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	16	175	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	16	175	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	16	175	18	174	NAC domain-containing protein 19
3swm_B	1e-53	16	175	18	174	NAC domain-containing protein 19
3swm_C	1e-53	16	175	18	174	NAC domain-containing protein 19
3swm_D	1e-53	16	175	18	174	NAC domain-containing protein 19
3swp_A	1e-53	16	175	18	174	NAC domain-containing protein 19
3swp_B	1e-53	16	175	18	174	NAC domain-containing protein 19
3swp_C	1e-53	16	175	18	174	NAC domain-containing protein 19
3swp_D	1e-53	16	175	18	174	NAC domain-containing protein 19
4dul_A	1e-53	16	175	15	171	NAC domain-containing protein 19
4dul_B	1e-53	16	175	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G031600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006371151.1	0.0	NAC domain-containing protein 87 isoform X1
Swissprot	Q9FK44	1e-113	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	U5FEC8	0.0	U5FEC8_POPTR; NAC family protein
STRING	POPTR_0019s04710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-112	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Potri.019G031600.1
Entrez Gene	7469864

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]