PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G149900.2
Common NamePOPTR_0018s14680g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 473aa    MW: 51720.6 Da    PI: 8.3244
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G149900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.8e-41171248178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC+ dl++ak+yhrrh++Ce+hsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrr++q+
  Potri.018G149900.2 171 RCQVEGCNLDLKSAKDYHRRHRICEKHSKSPKVIVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRPQP 248
                         6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-35165233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.018169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-39170251IPR004333Transcription factor, SBP-box
PfamPF031101.1E-32172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDWNSTASEG NWENIAGLSA KASDIPKQVP LAYHETEGDG AIDKAITYSS GGGLSSSDLW  60
HCSSSKSSVS PSVDSSLKGG IKTYSTADGF PGVIIRKDLT RVESTENIPS LGASASSGEP  120
VIGLKLGKRM YFEDICTTST AKSSSSSIVS TSCTATTKRS RASYPSTQSP RCQVEGCNLD  180
LKSAKDYHRR HRICEKHSKS PKVIVAGMER RFCQQCSRFH ELSEFDDKKR SCRRRLSDHN  240
ARRRRPQPEA IRFNSARPSS SPSSFYGCHF NFKDGRQQMN VVLNRVPFLA GNSTWQSECG  300
FKVTHAGDFF IRPAKAGGIH RQLSYPCNEV PDAASTIPTD SDKIISFERS TPQVFSQGFE  360
GSALTSNIEV APDLRRALSL LSTTSWGSNE HGSTSLDQLM LANQTSMTQP MINAELQNCP  420
VASSENARME QASLESRVHS LDLHDNGNVQ LQEFQLLKAP YATGCFYSNQ FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271722451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244KKRSCRRRLSDHNARRRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G149900.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372254.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_006372255.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_024446068.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_024446069.10.0squamosa promoter-binding-like protein 12 isoform X1
SwissprotQ5Z8182e-81SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLA0A2K1X1310.0A0A2K1X131_POPTR; Uncharacterized protein
TrEMBLA0A385JIS50.0A0A385JIS5_POPTO; Squamosa promoter binding protein-like 2
STRINGPOPTR_0018s14680.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-53squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]