PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.018G141800.5 | ||||||||
Common Name | POPTR_0018s13860g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25570.2 Da PI: 5.2146 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 2e-13 | 56 | 99 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L Potri.018G141800.5 56 IVSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99 567*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.494 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-18 | 51 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.33E-14 | 53 | 104 | No hit | No description |
SMART | SM00353 | 1.8E-15 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-17 | 56 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-11 | 56 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AATKNIVSER 60 NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQEKQIQAEL SELESGKSKK 120 NQGGFGVYYH QELPVLLRSK KKKIDYQFCD FGGSKISPIE LLELRVAYMG ENTLLVSLTC 180 NKRTDTMVKL CEVFESLGLK IITANITTVS GRVLKTVFIE VSLFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 55 | 99 | 9 | 53 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.018G141800.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325261.2 | 1e-163 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 9e-85 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | B9IN67 | 1e-161 | B9IN67_POPTR; BHLH family protein | ||||
STRING | cassava4.1_015716m | 1e-130 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.2 | 3e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.018G141800.5 |
Entrez Gene | 7490495 |