PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G127700.1
Common NamePOPTR_0018s12780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 231aa    MW: 26323.4 Da    PI: 8.1898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G127700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151259148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W +eEd++l+ +v+ +G g+W+t++++ g+ R +k+c++rw +yl
  Potri.018G127700.1 12 KGLWKPEEDLILKTYVETHGEGNWSTVSKKSGLMRGGKSCRLRWKNYL 59
                        678*******************************************97 PP
2Myb_DNA-binding51.32.7e-1665110148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++eE++ +++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Potri.018G127700.1  65 RGGMSQEEEDMIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                         6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.207759IPR017930Myb domain
SuperFamilySSF466892.37E-2810106IPR009057Homeodomain-like
SMARTSM007171.7E-121161IPR001005SANT/Myb domain
PfamPF002499.4E-141259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-221366IPR009057Homeodomain-like
CDDcd001677.79E-101559No hitNo description
PROSITE profilePS5129424.74760114IPR017930Myb domain
SMARTSM007175.0E-1664112IPR001005SANT/Myb domain
PfamPF002491.7E-1465110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2467114IPR009057Homeodomain-like
CDDcd001671.90E-1168110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MESREAKPKA KKGLWKPEED LILKTYVETH GEGNWSTVSK KSGLMRGGKS CRLRWKNYLR  60
PNIKRGGMSQ EEEDMIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKRLPSGKRK  120
STDSNPDQDD NNTKENKSKR LRALGDSQPT GNTSPIGSTE ELEGKNQEKE ERSAVSDVWA  180
QQDAQSMMNY YIESPMVPDN NATFVFDDEP FLAYWDSFVL FESVGCGGDW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-24811423128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G127700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325206.11e-172transcription factor MYB82
SwissprotQ9LTF72e-66MYB82_ARATH; Transcription factor MYB82
TrEMBLB9IMW01e-170B9IMW0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12780.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-66myb domain protein 82